RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 MTHFSP49914 203 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ETV1P50549 477 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CYP2J2P51589 502 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 NAPAP54920 295 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 TMBIM6P55061 237 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ADAM17P78536 824 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MRPS22P82650 360 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 ARID5AQ03989 594 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ARID5BQ14865 1188 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ZMAT1Q5H9K5 638 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 DCAF17Q5H9S7 520 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 RNF43Q68DV7 783 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SNRNP48Q6IEG0 339 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 HMBOX1Q6NT76 420 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 IYDQ6PHW0 289 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 IZUMO2Q6UXV1 221 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MSANTD1Q6ZTZ1 278 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 LRRC8DQ7L1W4 858 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 IFNEQ86WN2 208 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 KIF18BQ86Y91 864 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SLC4A11Q8NBS3 891 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ADCY4Q8NFM4 1077 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SLC30A5Q8TAD4 765 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 METTL6Q8TCB7 284 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 DDX54Q8TDD1 881 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 NMD3Q96D46 503 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 PIGSQ96S52 555 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 BTBD10Q9BSF8 475 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 GANQ9H2C0 597 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SLA2Q9H6Q3 261 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 AZI2Q9H6S1 392 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CD248Q9HCU0 757 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 SLC24A2Q9UI40 661 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 PLEKHA6Q9Y2H5 1048 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 COQ6Q9Y2Z9 468 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 TELO2Q9Y4R8 837 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CLDN25C9JDP6 229 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PCDHGA12O60330 932 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TPST1O60507 370 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 COQ9O75208 318 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 AHSA1O95433 338 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SPARCP09486 303 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 IL15P40933 162 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 GMPSP49915 693 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 NCKAP1LP55160 1127 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 MYL6P60660 151 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 DYNLL1P63167 89 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 UBXN2BQ14CS0 331 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 EDRF1Q3B7T1 1238 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CFAP70Q5T0N1 1121 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 FAM43BQ6ZT52 329 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 RFX8Q6ZV50 586 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CTU1Q7Z7A3 348 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 CLVS1Q8IUQ0 354 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 FUKQ8N0W3 1084 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 NLGN1Q8N2Q7 840 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ANKRD13CQ8N6S4 541 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 EMC1Q8N766 993 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ANKFN1Q8N957 763 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 REPS2Q8NFH8 660 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 EEF1AKMT1Q8WVE0 214 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CNKSR1Q969H4 720 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SSX3Q99909 188 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 BCL7BQ9BQE9 202 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TBCDQ9BTW9 1192 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 DSCC1Q9BVC3 393 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 NUAK2Q9H093 628 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 HDHD2Q9H0R4 259 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 RMND5AQ9H871 391 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 COMMD8Q9NX08 183 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 VPS9D1Q9Y2B5 631 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 KCNE2Q9Y6J6 123 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CYP3A7-CYP3A51PA0A087WV96 503 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 LINC00854A0A1B0GVQ3 168 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SSU72P8A0A1W2PR75 194 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ILVBLA1L0T0 632 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PCP4L1A6NKN8 68 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 KIF28PB7ZC32 967 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ZNF197O14709 1029 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 RNF113AO15541 343 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 ENO2P09104 434 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 CHN1P15882 459 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CYP3A7P24462 503 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CCNA1P78396 465 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ABATP80404 500 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 FOXK2Q01167 660 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 YWHAHQ04917 246 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 SMAD1Q15797 465 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 FAM189A2Q15884 450 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 HIF1AQ16665 826 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 VMACQ2NL98 169 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PLET1Q6UQ28 207 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PI16Q6UXB8 463 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SAMD14Q8IZD0 417 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 HM13Q8TCT9 377 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 MCOLN3Q8TDD5 553 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 HELQQ8TDG4 1101 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 JARID2Q92833 1246 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 OSBP2Q969R2 916 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms