RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 MYT1Q01538 1121 aa6.42□□□□□ -1.38
USP53-205ENST00000509769 NISCHQ9Y2I1 1504 aa6.32□□□□□ -1.4
USP53-205ENST00000509769 PELP1Q8IZL8 1130 aaKnown RBP6.2□□□□□ -1.42
USP53-205ENST00000509769 ABCC9O60706 1549 aa6.06□□□□□ -1.44
USP53-205ENST00000509769 DNAJC5Q9H3Z4 198 aa5.99□□□□□ -1.45
USP53-205ENST00000509769 TTBK1Q5TCY1 1321 aaPredicted RBP5.96□□□□□ -1.46
USP53-205ENST00000509769 CCDC180Q9P1Z9 1646 aa5.87□□□□□ -1.47
USP53-205ENST00000509769 RB1CC1Q8TDY2 1594 aa5.83□□□□□ -1.48
USP53-205ENST00000509769 DNAJC5BQ9UF47 199 aa5.8□□□□□ -1.48
USP53-205ENST00000509769 YTHDC1Q96MU7 727 aaKnown RBP5.79□□□□□ -1.48
USP53-205ENST00000509769 CCER1Q8TC90 406 aaPredicted RBP5.78□□□□□ -1.48
USP53-205ENST00000509769 SHROOM4Q9ULL8 1493 aa5.73□□□□□ -1.49
USP53-205ENST00000509769 ERICH6Q7L0X2 663 aa5.73□□□□□ -1.49
USP53-205ENST00000509769 CUX2O14529 1486 aa5.69□□□□□ -1.5
USP53-205ENST00000509769 NACADO15069 1562 aa5.68□□□□□ -1.5
USP53-205ENST00000509769 AEBP2Q6ZN18 517 aaPredicted RBP5.63□□□□□ -1.51
USP53-205ENST00000509769 CECR2Q9BXF3 1484 aa5.62□□□□□ -1.51
USP53-205ENST00000509769 CENPBP07199 599 aaPredicted RBP5.6□□□□□ -1.51
USP53-205ENST00000509769 PABPN1Q86U42 306 aaKnown RBP eCLIP5.57□□□□□ -1.52
USP53-205ENST00000509769 ZEB1P37275 1124 aaPredicted RBP5.54□□□□□ -1.52
USP53-205ENST00000509769 TRIM41Q8WV44 630 aa5.54□□□□□ -1.52
USP53-205ENST00000509769 ERCC6Q03468 1493 aa5.5□□□□□ -1.53
USP53-205ENST00000509769 RANGAP1P46060 587 aaPredicted RBP5.48□□□□□ -1.53
USP53-205ENST00000509769 MYO15BQ96JP2 1530 aa5.48□□□□□ -1.53
USP53-205ENST00000509769 CC2D2AQ9P2K1 1620 aa5.48□□□□□ -1.53
USP53-205ENST00000509769 GLIPR1L2Q4G1C9 344 aa5.43□□□□□ -1.54
USP53-205ENST00000509769 MYT1LQ9UL68 1186 aa5.42□□□□□ -1.54
USP53-205ENST00000509769 EIF4G1Q04637 1599 aaKnown RBP5.38□□□□□ -1.55
USP53-205ENST00000509769 DCAF8L2P0C7V8 631 aa5.37□□□□□ -1.55
USP53-205ENST00000509769 NEFLP07196 543 aa5.36□□□□□ -1.55
USP53-205ENST00000509769 BICRAQ9NZM4 1560 aa5.34□□□□□ -1.55
USP53-205ENST00000509769 UNC13AQ9UPW8 1703 aa5.3□□□□□ -1.56
USP53-205ENST00000509769 CLSPNQ9HAW4 1339 aa5.3□□□□□ -1.56
USP53-205ENST00000509769 OSCARQ8IYS5 282 aa5.3□□□□□ -1.56
USP53-205ENST00000509769 EHMT2Q96KQ7 1210 aa5.3□□□□□ -1.56
USP53-205ENST00000509769 RTL5Q5HYW3 569 aaPredicted RBP5.28□□□□□ -1.56
USP53-205ENST00000509769 TRHP20396 242 aaPredicted RBP5.27□□□□□ -1.57
USP53-205ENST00000509769 DAXXQ9UER7 740 aaPredicted RBP5.26□□□□□ -1.57
USP53-205ENST00000509769 PDS5BQ9NTI5 1447 aa5.23□□□□□ -1.57
USP53-205ENST00000509769 FAM9AQ8IZU1 332 aaPredicted RBP5.22□□□□□ -1.57
USP53-205ENST00000509769 DCAF1Q9Y4B6 1507 aa5.21□□□□□ -1.58
USP53-205ENST00000509769 POLR3GLQ9BT43 218 aa5.2□□□□□ -1.58
USP53-205ENST00000509769 SCRIBQ14160 1630 aa5.19□□□□□ -1.58
USP53-205ENST00000509769 BAZ1AQ9NRL2 1556 aaPredicted RBP5.19□□□□□ -1.58
USP53-205ENST00000509769 LAMC3Q9Y6N6 1575 aa5.17□□□□□ -1.58
USP53-205ENST00000509769 NCLP19338 710 aaKnown RBP5.16□□□□□ -1.58
USP53-205ENST00000509769 SLC24A1O60721 1099 aa5.16□□□□□ -1.58
USP53-205ENST00000509769 ILDR1Q86SU0 546 aaPredicted RBP5.16□□□□□ -1.58
USP53-205ENST00000509769 NCAPD3P42695 1498 aa5.15□□□□□ -1.58
USP53-205ENST00000509769 SMARCA2P51531 1590 aa5.15□□□□□ -1.58
USP53-205ENST00000509769 MRC2Q9UBG0 1479 aa5.14□□□□□ -1.59
USP53-205ENST00000509769 THOC2Q8NI27 1593 aaKnown RBP5.14□□□□□ -1.59
USP53-205ENST00000509769 APLP2Q06481 763 aa5.13□□□□□ -1.59
USP53-205ENST00000509769 HMGXB3Q12766 1538 aa5.13□□□□□ -1.59
USP53-205ENST00000509769 ERCC6L2Q5T890 1561 aa5.1□□□□□ -1.59
USP53-205ENST00000509769 RIMBP3CA6NJZ7 1639 aa5.1□□□□□ -1.59
USP53-205ENST00000509769 RIMBP3BA6NNM3 1639 aa5.1□□□□□ -1.59
USP53-205ENST00000509769 RIMBP3Q9UFD9 1639 aa5.1□□□□□ -1.59
USP53-205ENST00000509769 TNNT2P45379 298 aaPredicted RBP5.1□□□□□ -1.59
USP53-205ENST00000509769 ZNF316A6NFI3 1004 aaPredicted RBP5.09□□□□□ -1.59
USP53-205ENST00000509769 TRIM44Q96DX7 344 aaPredicted RBP5.09□□□□□ -1.6
USP53-205ENST00000509769 RSF1Q96T23 1441 aaPredicted RBP5.09□□□□□ -1.6
USP53-205ENST00000509769 FBXO41Q8TF61 875 aa5.08□□□□□ -1.6
USP53-205ENST00000509769 WDR62O43379 1518 aa5.07□□□□□ -1.6
USP53-205ENST00000509769 ARHGEF11O15085 1522 aa5.06□□□□□ -1.6
USP53-205ENST00000509769 HRCP23327 699 aa5.06□□□□□ -1.6
USP53-205ENST00000509769 ZNF326Q5BKZ1 582 aaKnown RBP5.06□□□□□ -1.6
USP53-205ENST00000509769 ANP32BQ92688 251 aaKnown RBP5.04□□□□□ -1.6
USP53-205ENST00000509769 CYB5RLQ6IPT4 315 aa5.04□□□□□ -1.6
USP53-205ENST00000509769 LMTK3Q96Q04 1460 aa5.03□□□□□ -1.6
USP53-205ENST00000509769 BAZ1BQ9UIG0 1483 aaKnown RBP5.03□□□□□ -1.6
USP53-205ENST00000509769 SOCS7O14512 581 aa5.03□□□□□ -1.6
USP53-205ENST00000509769 ANP32EQ9BTT0 268 aa5.03□□□□□ -1.6
USP53-205ENST00000509769 CEP164Q9UPV0 1460 aa5.03□□□□□ -1.6
USP53-205ENST00000509769 PTMSP20962 102 aa5□□□□□ -1.61
USP53-205ENST00000509769 ARID4BQ4LE39 1312 aaPredicted RBP5□□□□□ -1.61
USP53-205ENST00000509769 CDK11AQ9UQ88 783 aaPredicted RBP5□□□□□ -1.61
USP53-205ENST00000509769 ATAD2BQ9ULI0 1458 aa5□□□□□ -1.61
USP53-205ENST00000509769 ZCCHC6Q5VYS8 1495 aaKnown RBP4.99□□□□□ -1.61
USP53-205ENST00000509769 IFT140Q96RY7 1462 aa4.99□□□□□ -1.61
USP53-205ENST00000509769 CADPSQ9ULU8 1353 aa4.98□□□□□ -1.61
USP53-205ENST00000509769 EIF5BO60841 1220 aaKnown RBP4.97□□□□□ -1.61
USP53-205ENST00000509769 ABCC8Q09428 1581 aa4.97□□□□□ -1.61
USP53-205ENST00000509769 ANP32AP39687 249 aaKnown RBP4.97□□□□□ -1.61
USP53-205ENST00000509769 KIF21AQ7Z4S6 1674 aa4.96□□□□□ -1.62
USP53-205ENST00000509769 CDK11BP21127 795 aaKnown RBP4.96□□□□□ -1.62
USP53-205ENST00000509769 PCGF6Q9BYE7 350 aa4.96□□□□□ -1.62
USP53-205ENST00000509769 TRIM26Q12899 539 aaPredicted RBP4.96□□□□□ -1.62
USP53-205ENST00000509769 NPM1P06748 294 aaKnown RBP eCLIP4.95□□□□□ -1.62
USP53-205ENST00000509769 NESP48681 1621 aa4.95□□□□□ -1.62
USP53-205ENST00000509769 ERICH6BQ5W0A0 696 aa4.94□□□□□ -1.62
USP53-205ENST00000509769 HMGB1P09429 215 aaKnown RBP4.94□□□□□ -1.62
USP53-205ENST00000509769 SYNJ1O43426 1573 aa4.93□□□□□ -1.62
USP53-205ENST00000509769 ARAP1Q96P48 1450 aa4.93□□□□□ -1.62
USP53-205ENST00000509769 WDR97A6NE52 1622 aa4.92□□□□□ -1.62
USP53-205ENST00000509769 DISP3Q9P2K9 1392 aa4.91□□□□□ -1.62
USP53-205ENST00000509769 LAS1LQ9Y4W2 734 aaKnown RBP4.91□□□□□ -1.62
USP53-205ENST00000509769 NEFMP07197 916 aa4.9□□□□□ -1.62
USP53-205ENST00000509769 TOP2BQ02880 1626 aa4.9□□□□□ -1.62
USP53-205ENST00000509769 FANCD2Q9BXW9 1451 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms