RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeastyeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC42YLR229C PDS5Q04264 1277 aa5.65□□□□□ -1.5
CDC42YLR229C ISR1Q06098 443 aaKnown RBP5.65□□□□□ -1.5
CDC42YLR229C NOB1Q08444 459 aaKnown RBP5.65□□□□□ -1.5
CDC42YLR229C YLR419WQ06698 1435 aaKnown RBP5.65□□□□□ -1.51
CDC42YLR229C NUP192P47054 1683 aa5.64□□□□□ -1.51
CDC42YLR229C SPE2P21182 396 aa5.64□□□□□ -1.51
CDC42YLR229C AMS1P22855 1083 aa5.64□□□□□ -1.51
CDC42YLR229C UBX7P38349 436 aa5.64□□□□□ -1.51
CDC42YLR229C CST6P40535 587 aa5.64□□□□□ -1.51
CDC42YLR229C ALD4P46367 519 aaKnown RBP5.64□□□□□ -1.51
CDC42YLR229C APP1P53933 587 aa5.64□□□□□ -1.51
CDC42YLR229C PHO87P25360 923 aa5.63□□□□□ -1.51
CDC42YLR229C CDC3P32457 520 aaKnown RBP5.63□□□□□ -1.51
CDC42YLR229C SLX8P40072 274 aa5.63□□□□□ -1.51
CDC42YLR229C MIP1P15801 1254 aa5.62□□□□□ -1.51
CDC42YLR229C NAP1P25293 417 aaKnown RBP5.62□□□□□ -1.51
CDC42YLR229C MKS1P34072 584 aa5.62□□□□□ -1.51
CDC42YLR229C TAF8Q03750 510 aa5.62□□□□□ -1.51
CDC42YLR229C TSC13Q99190 310 aa5.62□□□□□ -1.51
CDC42YLR229C RAD9P14737 1309 aa5.62□□□□□ -1.51
CDC42YLR229C HAP1P0CE41 1502 aa5.62□□□□□ -1.51
CDC42YLR229C SDH2P21801 266 aa5.61□□□□□ -1.51
CDC42YLR229C TBS1P38114 1094 aa5.61□□□□□ -1.51
CDC42YLR229C EMW1P42842 904 aaKnown RBP5.61□□□□□ -1.51
CDC42YLR229C APL6P46682 809 aa5.61□□□□□ -1.51
CDC42YLR229C BCK1Q01389 1478 aa5.61□□□□□ -1.51
CDC42YLR229C HED1Q03937 162 aa5.61□□□□□ -1.51
CDC42YLR229C YML083CQ04526 418 aa5.61□□□□□ -1.51
CDC42YLR229C PDI1P17967 522 aaKnown RBP5.6□□□□□ -1.51
CDC42YLR229C AIM9P40053 627 aaKnown RBP5.6□□□□□ -1.51
CDC42YLR229C CAB1Q04430 367 aa5.6□□□□□ -1.51
CDC42YLR229C GAS4Q08271 471 aa5.6□□□□□ -1.51
CDC42YLR229C CBC2Q08920 208 aaKnown RBP RIP-Chip data5.6□□□□□ -1.51not detected
CDC42YLR229C DAT1P13483 248 aaKnown RBP5.59□□□□□ -1.51
CDC42YLR229C FBP26P32604 452 aa5.59□□□□□ -1.51
CDC42YLR229C UTR2P32623 467 aa5.59□□□□□ -1.51
CDC42YLR229C CAB3P36076 571 aa5.59□□□□□ -1.51
CDC42YLR229C VAN1P23642 535 aa5.58□□□□□ -1.52
CDC42YLR229C CHZ1P40019 153 aaPredicted RBP5.58□□□□□ -1.52
CDC42YLR229C PUF6Q04373 656 aaKnown RBP5.58□□□□□ -1.52
CDC42YLR229C HDA3Q06623 655 aa5.58□□□□□ -1.52
CDC42YLR229C BDS1Q08347 646 aa5.58□□□□□ -1.52
CDC42YLR229C UGA3P26370 528 aa5.57□□□□□ -1.52
CDC42YLR229C SLD2P34252 453 aa5.57□□□□□ -1.52
CDC42YLR229C DLD3P39976 496 aaKnown RBP5.57□□□□□ -1.52
CDC42YLR229C ACS2P52910 683 aaKnown RBP5.57□□□□□ -1.52
CDC42YLR229C CWH41P53008 833 aa5.57□□□□□ -1.52
CDC42YLR229C HST3P53687 447 aa5.57□□□□□ -1.52
CDC42YLR229C ISU1Q03020 165 aa5.57□□□□□ -1.52
CDC42YLR229C TRS33Q99394 268 aa5.57□□□□□ -1.52
CDC42YLR229C DNF3Q12674 1656 aa5.56□□□□□ -1.52
CDC42YLR229C DPS1P04802 557 aaKnown RBP5.56□□□□□ -1.52
CDC42YLR229C PRS1P32895 427 aaKnown RBP5.56□□□□□ -1.52
CDC42YLR229C MRT4P33201 236 aaKnown RBP5.56□□□□□ -1.52
CDC42YLR229C MAK10Q02197 733 aa5.56□□□□□ -1.52
CDC42YLR229C HAL5P38970 855 aaKnown RBP5.55□□□□□ -1.52
CDC42YLR229C YML020WQ03722 664 aa5.55□□□□□ -1.52
CDC42YLR229C KRE5P22023 1365 aa5.55□□□□□ -1.52
CDC42YLR229C NTH2P35172 780 aa5.54□□□□□ -1.52
CDC42YLR229C RIA1P53893 1110 aa5.54□□□□□ -1.52
CDC42YLR229C DFG5Q05031 458 aa5.54□□□□□ -1.52
CDC42YLR229C PUN1Q06991 263 aa5.54□□□□□ -1.52
CDC42YLR229C HAT1Q12341 374 aa5.54□□□□□ -1.52
CDC42YLR229C SRF1Q12516 437 aa5.54□□□□□ -1.52
CDC42YLR229C CYT1P07143 309 aa5.53□□□□□ -1.52
CDC42YLR229C CDC4P07834 779 aa5.53□□□□□ -1.52
CDC42YLR229C RPS6AP0CX37 236 aaKnown RBP5.53□□□□□ -1.52
CDC42YLR229C RPS6BP0CX38 236 aaPredicted RBP5.53□□□□□ -1.52
CDC42YLR229C YBL086CP38177 466 aa5.53□□□□□ -1.52
CDC42YLR229C ROM1P53046 1155 aa5.53□□□□□ -1.52
CDC42YLR229C KAR5Q04746 504 aa5.53□□□□□ -1.52
CDC42YLR229C CFT1Q06632 1357 aaKnown RBP5.53□□□□□ -1.52
CDC42YLR229C RAS1P01119 309 aa5.52□□□□□ -1.53
CDC42YLR229C FUR4P05316 633 aaKnown RBP5.52□□□□□ -1.53
CDC42YLR229C SPT2P06843 333 aaPredicted RBP5.52□□□□□ -1.53
CDC42YLR229C STE6P12866 1290 aa5.51□□□□□ -1.53
CDC42YLR229C RCM1P53972 490 aa5.51□□□□□ -1.53
CDC42YLR229C ARG82P07250 355 aa5.5□□□□□ -1.53
CDC42YLR229C SWI5P08153 709 aa5.5□□□□□ -1.53
CDC42YLR229C SRS2P12954 1174 aa5.5□□□□□ -1.53
CDC42YLR229C RRN6P32786 894 aa5.5□□□□□ -1.53
CDC42YLR229C MNN4P36044 1178 aa5.5□□□□□ -1.53
CDC42YLR229C EBP2P36049 427 aaKnown RBP5.5□□□□□ -1.53
CDC42YLR229C MSB3P48566 633 aaPredicted RBP5.5□□□□□ -1.53
CDC42YLR229C IOC4Q04213 475 aa5.5□□□□□ -1.53
CDC42YLR229C PNP1Q05788 311 aa5.5□□□□□ -1.53
CDC42YLR229C MET32Q12041 191 aa5.5□□□□□ -1.53
CDC42YLR229C PSK1P31374 1356 aa5.5□□□□□ -1.53
CDC42YLR229C AFT1P22149 690 aa5.49□□□□□ -1.53
CDC42YLR229C PPH3P32345 308 aa5.49□□□□□ -1.53
CDC42YLR229C ASH1P34233 588 aa5.49□□□□□ -1.53
CDC42YLR229C ALA1P40825 983 aaKnown RBP5.49□□□□□ -1.53
CDC42YLR229C CLA4P48562 842 aa5.49□□□□□ -1.53
CDC42YLR229C YNR029CP53729 429 aaKnown RBP5.49□□□□□ -1.53
CDC42YLR229C WTM2Q12206 467 aa5.49□□□□□ -1.53
CDC42YLR229C YML133CQ03099 1374 aa5.49□□□□□ -1.53
CDC42YLR229C YLL067CQ07888 1374 aa5.49□□□□□ -1.53
CDC42YLR229C YLL066CQ99208 1374 aa5.49□□□□□ -1.53
CDC42YLR229C MLP1Q02455 1875 aaKnown RBP5.48□□□□□ -1.53
CDC42YLR229C RPP0P05317 312 aaKnown RBP5.48□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 30.5 ms