RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	HIM1	Q06674	414 aa		7.56	□□□□□ -1.2
RPT3	YDR394W	RAD59	Q12223	238 aa		7.56	□□□□□ -1.2
RPT3	YDR394W	SSA2	P10592	639 aa	Known RBP	7.55	□□□□□ -1.2
RPT3	YDR394W	BRE2	P43132	505 aa		7.55	□□□□□ -1.2
RPT3	YDR394W	SYH1	Q02875	849 aa	Known RBP	7.55	□□□□□ -1.2
RPT3	YDR394W	SAP155	P43612	1002 aa		7.54	□□□□□ -1.2
RPT3	YDR394W	THI22	Q06490	572 aa		7.54	□□□□□ -1.2
RPT3	YDR394W	SIR4	P11978	1358 aa		7.54	□□□□□ -1.2
RPT3	YDR394W	RPS24A	P0CX31	135 aa	Known RBP	7.53	□□□□□ -1.2
RPT3	YDR394W	RPS24B	P0CX32	135 aa	Known RBP	7.53	□□□□□ -1.2
RPT3	YDR394W	CSE4	P36012	229 aa		7.53	□□□□□ -1.2
RPT3	YDR394W	FUN12	P39730	1002 aa	Known RBP	7.53	□□□□□ -1.2
RPT3	YDR394W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	7.53	□□□□□ -1.2	not detected
RPT3	YDR394W	RAD2	P07276	1031 aa		7.52	□□□□□ -1.21
RPT3	YDR394W	HEF3	P53978	1044 aa	Known RBP	7.52	□□□□□ -1.21
RPT3	YDR394W	YRF1-4	O13559	1382 aa		7.51	□□□□□ -1.21
RPT3	YDR394W	ASH1	P34233	588 aa		7.51	□□□□□ -1.21
RPT3	YDR394W	AFT1	P22149	690 aa		7.5	□□□□□ -1.21
RPT3	YDR394W	KIP2	P28743	706 aa		7.5	□□□□□ -1.21
RPT3	YDR394W	GAS4	Q08271	471 aa		7.5	□□□□□ -1.21
RPT3	YDR394W	VAC17	P25591	423 aa		7.49	□□□□□ -1.21
RPT3	YDR394W	IXR1	P33417	597 aa		7.49	□□□□□ -1.21
RPT3	YDR394W	RPC31	P17890	251 aa		7.48	□□□□□ -1.21
RPT3	YDR394W	AKL1	P38080	1108 aa	Known RBP	7.48	□□□□□ -1.21
RPT3	YDR394W	YIL092W	P40497	633 aa		7.48	□□□□□ -1.21
RPT3	YDR394W	THI12	P42883	340 aa		7.48	□□□□□ -1.21
RPT3	YDR394W	THI5	P43534	340 aa		7.48	□□□□□ -1.21
RPT3	YDR394W	THI11	P47183	340 aa		7.48	□□□□□ -1.21
RPT3	YDR394W	GCR2	Q01722	534 aa		7.48	□□□□□ -1.21
RPT3	YDR394W	THI13	Q07748	340 aa		7.48	□□□□□ -1.21
RPT3	YDR394W	RTT109	Q07794	436 aa		7.48	□□□□□ -1.21
RPT3	YDR394W	YFR016C	P43597	1233 aa	Known RBP	7.47	□□□□□ -1.21
RPT3	YDR394W	HST3	P53687	447 aa		7.47	□□□□□ -1.21
RPT3	YDR394W	YNL050C	P53952	270 aa		7.46	□□□□□ -1.22
RPT3	YDR394W	HPC2	Q01448	625 aa		7.46	□□□□□ -1.22
RPT3	YDR394W	MAM1	P40065	302 aa		7.45	□□□□□ -1.22
RPT3	YDR394W	FIG4	P42837	879 aa		7.45	□□□□□ -1.22
RPT3	YDR394W	MAK16	P10962	306 aa	Predicted RBP	7.44	□□□□□ -1.22
RPT3	YDR394W	MRT4	P33201	236 aa	Known RBP	7.44	□□□□□ -1.22
RPT3	YDR394W	DSD1	P53095	428 aa		7.44	□□□□□ -1.22
RPT3	YDR394W	DAL5	P15365	543 aa		7.43	□□□□□ -1.22
RPT3	YDR394W	GYP7	P48365	746 aa		7.43	□□□□□ -1.22
RPT3	YDR394W	CTF4	Q01454	927 aa		7.43	□□□□□ -1.22
RPT3	YDR394W	EDE1	P34216	1381 aa		7.43	□□□□□ -1.22
RPT3	YDR394W	NTH2	P35172	780 aa		7.42	□□□□□ -1.22
RPT3	YDR394W	POL32	P47110	350 aa		7.42	□□□□□ -1.22
RPT3	YDR394W	YJR115W	P47152	169 aa		7.42	□□□□□ -1.22
RPT3	YDR394W	MSB3	P48566	633 aa	Predicted RBP	7.42	□□□□□ -1.22
RPT3	YDR394W	ZDS1	P50111	915 aa	Known RBP	7.42	□□□□□ -1.22
RPT3	YDR394W	APC1	P53886	1748 aa		7.41	□□□□□ -1.22
RPT3	YDR394W	USO1	P25386	1790 aa		7.41	□□□□□ -1.22
RPT3	YDR394W	PRP5	P21372	849 aa	Predicted RBP	7.41	□□□□□ -1.22
RPT3	YDR394W	TFB3	Q03290	321 aa		7.41	□□□□□ -1.22
RPT3	YDR394W	YRF1-2	P40105	1681 aa		7.41	□□□□□ -1.22
RPT3	YDR394W	YIR014W	P40570	242 aa		7.4	□□□□□ -1.22
RPT3	YDR394W	AOS1	Q06624	347 aa		7.4	□□□□□ -1.22
RPT3	YDR394W	YPR084W	Q06821	456 aa		7.4	□□□□□ -1.22
RPT3	YDR394W	SLM3	Q12093	417 aa		7.4	□□□□□ -1.22
RPT3	YDR394W	TEC1	P18412	486 aa		7.39	□□□□□ -1.23
RPT3	YDR394W	RRT14	P40470	206 aa		7.39	□□□□□ -1.23
RPT3	YDR394W	UGA3	P26370	528 aa		7.38	□□□□□ -1.23
RPT3	YDR394W	PRP45	P28004	379 aa	Predicted RBP	7.38	□□□□□ -1.23
RPT3	YDR394W	HSP104	P31539	908 aa	Known RBP	7.38	□□□□□ -1.23
RPT3	YDR394W	BRL1	P38770	471 aa		7.38	□□□□□ -1.23
RPT3	YDR394W	PKC1	P24583	1151 aa		7.37	□□□□□ -1.23
RPT3	YDR394W	MET22	P32179	357 aa		7.37	□□□□□ -1.23
RPT3	YDR394W	EMW1	P42842	904 aa	Known RBP	7.37	□□□□□ -1.23
RPT3	YDR394W	NAF1	P53919	492 aa	Known RBP	7.37	□□□□□ -1.23
RPT3	YDR394W	APP1	P53933	587 aa		7.37	□□□□□ -1.23
RPT3	YDR394W	SRT1	Q03175	343 aa		7.37	□□□□□ -1.23
RPT3	YDR394W	ECM16	Q04217	1267 aa	Known RBP	7.37	□□□□□ -1.23
RPT3	YDR394W	PUF6	Q04373	656 aa	Known RBP	7.37	□□□□□ -1.23
RPT3	YDR394W	LYS2	P07702	1392 aa		7.36	□□□□□ -1.23
RPT3	YDR394W	NSE3	Q05541	303 aa		7.36	□□□□□ -1.23
RPT3	YDR394W	YBL086C	P38177	466 aa		7.35	□□□□□ -1.23
RPT3	YDR394W	YBL036C	P38197	257 aa		7.35	□□□□□ -1.23
RPT3	YDR394W	OPY1	P38271	328 aa		7.35	□□□□□ -1.23
RPT3	YDR394W	YPP1	P46951	817 aa		7.35	□□□□□ -1.23
RPT3	YDR394W	PTK2	P47116	818 aa	Known RBP	7.35	□□□□□ -1.23
RPT3	YDR394W	ENV9	Q08651	330 aa		7.35	□□□□□ -1.23
RPT3	YDR394W	BMS1	Q08965	1183 aa	Known RBP	7.35	□□□□□ -1.23
RPT3	YDR394W	TCB1	Q12466	1186 aa		7.35	□□□□□ -1.23
RPT3	YDR394W	IME2	P32581	645 aa		7.34	□□□□□ -1.23
RPT3	YDR394W	RPS19A	P07280	144 aa	Known RBP	7.33	□□□□□ -1.24
RPT3	YDR394W	RPS19B	P07281	144 aa	Predicted RBP	7.33	□□□□□ -1.24
RPT3	YDR394W	KCC4	P25389	1037 aa		7.33	□□□□□ -1.24
RPT3	YDR394W	LEO1	P38439	464 aa		7.33	□□□□□ -1.24
RPT3	YDR394W	XKS1	P42826	600 aa		7.33	□□□□□ -1.24
RPT3	YDR394W	TY4B-H	P0C2J7	1802 aa		7.33	□□□□□ -1.24
RPT3	YDR394W	TY4B-J	P47024	1803 aa		7.33	□□□□□ -1.24
RPT3	YDR394W	RSF2	P46974	1380 aa		7.33	□□□□□ -1.24
RPT3	YDR394W	COQ4	O13525	335 aa		7.32	□□□□□ -1.24
RPT3	YDR394W	GAR1	P28007	205 aa	Known RBP	7.32	□□□□□ -1.24
RPT3	YDR394W	GUT2	P32191	649 aa		7.32	□□□□□ -1.24
RPT3	YDR394W	YDR444W	Q04093	687 aa		7.32	□□□□□ -1.24
RPT3	YDR394W	SPT5	P27692	1063 aa	Known RBP	7.31	□□□□□ -1.24
RPT3	YDR394W	BIO2	P32451	375 aa		7.31	□□□□□ -1.24
RPT3	YDR394W	YNG2	P38806	282 aa	Known RBP	7.31	□□□□□ -1.24
RPT3	YDR394W	CSI1	Q04368	295 aa		7.31	□□□□□ -1.24
RPT3	YDR394W	LCB5	Q06147	687 aa	Known RBP	7.31	□□□□□ -1.24

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms