RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PDS5BQ9NTI5 1447 aa9.96□□□□□ -0.82
USP28-202ENST00000535607 HRO43593 1189 aa9.95□□□□□ -0.82
USP28-202ENST00000535607 FDX1P10109 184 aa9.95□□□□□ -0.82
USP28-202ENST00000535607 HOXA2O43364 376 aa9.94□□□□□ -0.82
USP28-202ENST00000535607 NDUFV2P19404 249 aa9.94□□□□□ -0.82
USP28-202ENST00000535607 ATP6V1AP38606 617 aa9.94□□□□□ -0.82
USP28-202ENST00000535607 TUSC1Q2TAM9 212 aa9.94□□□□□ -0.82
USP28-202ENST00000535607 LIMD1Q9UGP4 676 aa9.94□□□□□ -0.82
USP28-202ENST00000535607 HPS5Q9UPZ3 1129 aa9.94□□□□□ -0.82
USP28-202ENST00000535607 FANCD2Q9BXW9 1451 aa9.93□□□□□ -0.82
USP28-202ENST00000535607 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.93□□□□□ -0.82
USP28-202ENST00000535607 ZBTB3Q9H5J0 574 aa9.93□□□□□ -0.82
USP28-202ENST00000535607 TSR3Q9UJK0 312 aaKnown RBP9.93□□□□□ -0.82
USP28-202ENST00000535607 NESP48681 1621 aa9.93□□□□□ -0.82
USP28-202ENST00000535607 CEP164Q9UPV0 1460 aa9.92□□□□□ -0.82
USP28-202ENST00000535607 SOWAHBA6NEL2 793 aa9.92□□□□□ -0.82
USP28-202ENST00000535607 FUT2Q10981 343 aa9.92□□□□□ -0.82
USP28-202ENST00000535607 TMEM259Q4ZIN3 620 aa9.92□□□□□ -0.82
USP28-202ENST00000535607 APBB1O00213 710 aa9.91□□□□□ -0.82
USP28-202ENST00000535607 PRPF38BQ5VTL8 546 aaKnown RBP9.91□□□□□ -0.82
USP28-202ENST00000535607 C6orf229H3BNL8 230 aa9.9□□□□□ -0.82
USP28-202ENST00000535607 RFC5P40937 340 aa9.9□□□□□ -0.82
USP28-202ENST00000535607 BCAMP50895 628 aa9.9□□□□□ -0.82
USP28-202ENST00000535607 ACIN1Q9UKV3 1341 aaKnown RBP9.89□□□□□ -0.83
USP28-202ENST00000535607 RAD21O60216 631 aa9.89□□□□□ -0.83
USP28-202ENST00000535607 UBTFP17480 764 aaKnown RBP9.89□□□□□ -0.83
USP28-202ENST00000535607 TSC1Q92574 1164 aa9.89□□□□□ -0.83
USP28-202ENST00000535607 PRM3Q9NNZ6 103 aa9.89□□□□□ -0.83
USP28-202ENST00000535607 KIF21AQ7Z4S6 1674 aa9.89□□□□□ -0.83
USP28-202ENST00000535607 SPDYE5A6NIY4 337 aa9.88□□□□□ -0.83
USP28-202ENST00000535607 ACTN4O43707 911 aaKnown RBP9.88□□□□□ -0.83
USP28-202ENST00000535607 MTMR2Q13614 643 aa9.88□□□□□ -0.83
USP28-202ENST00000535607 Q3C1V9 767 aa9.88□□□□□ -0.83
USP28-202ENST00000535607 POTEGQ6S5H5 508 aa9.88□□□□□ -0.83
USP28-202ENST00000535607 CDAN1Q8IWY9 1227 aa9.88□□□□□ -0.83
USP28-202ENST00000535607 HELBQ8NG08 1087 aaPredicted RBP9.88□□□□□ -0.83
USP28-202ENST00000535607 BIVM-ERCC5R4GMW8 1640 aa9.88□□□□□ -0.83
USP28-202ENST00000535607 WRNQ14191 1432 aaPredicted RBP eCLIP9.88□□□□□ -0.83
USP28-202ENST00000535607 ABCC8Q09428 1581 aa9.88□□□□□ -0.83
USP28-202ENST00000535607 TOP2BQ02880 1626 aa9.87□□□□□ -0.83
USP28-202ENST00000535607 LOC105371045A0A1W2PR82 267 aa9.87□□□□□ -0.83
USP28-202ENST00000535607 POTEMA6NI47 508 aa9.87□□□□□ -0.83
USP28-202ENST00000535607 PPP2R2DQ66LE6 453 aa9.87□□□□□ -0.83
USP28-202ENST00000535607 BANK1Q8NDB2 785 aa9.87□□□□□ -0.83
USP28-202ENST00000535607 KCTD12Q96CX2 325 aaKnown RBP9.87□□□□□ -0.83
USP28-202ENST00000535607 AP1G2O75843 785 aa9.86□□□□□ -0.83
USP28-202ENST00000535607 GUCA2AQ02747 115 aa9.86□□□□□ -0.83
USP28-202ENST00000535607 DNMBPQ6XZF7 1577 aa9.86□□□□□ -0.83
USP28-202ENST00000535607 ZMYND15Q9H091 742 aa9.86□□□□□ -0.83
USP28-202ENST00000535607 PCDHB3Q9Y5E6 796 aa9.86□□□□□ -0.83
USP28-202ENST00000535607 PCDHB15Q9Y5E8 787 aa9.86□□□□□ -0.83
USP28-202ENST00000535607 TTBK1Q5TCY1 1321 aaPredicted RBP9.85□□□□□ -0.83
USP28-202ENST00000535607 LILRB3O75022 631 aa9.85□□□□□ -0.83
USP28-202ENST00000535607 NR1I2O75469 434 aa9.85□□□□□ -0.83
USP28-202ENST00000535607 QPCTQ16769 361 aa9.85□□□□□ -0.83
USP28-202ENST00000535607 KRTAP3-3Q9BYR6 98 aa9.85□□□□□ -0.83
USP28-202ENST00000535607 KRTAP3-2Q9BYR7 98 aa9.85□□□□□ -0.83
USP28-202ENST00000535607 MRC2Q9UBG0 1479 aa9.85□□□□□ -0.83
USP28-202ENST00000535607 PUS10Q3MIT2 529 aaKnown RBP9.84□□□□□ -0.83
USP28-202ENST00000535607 NYAP1Q6ZVC0 841 aa9.84□□□□□ -0.83
USP28-202ENST00000535607 WWC1Q8IX03 1113 aa9.84□□□□□ -0.83
USP28-202ENST00000535607 CABLES1Q8TDN4 633 aa9.84□□□□□ -0.83
USP28-202ENST00000535607 ERCC6Q03468 1493 aa9.84□□□□□ -0.83
USP28-202ENST00000535607 SYNJ1O43426 1573 aa9.84□□□□□ -0.83
USP28-202ENST00000535607 THOC2Q8NI27 1593 aaKnown RBP9.84□□□□□ -0.83
USP28-202ENST00000535607 WDR62O43379 1518 aa9.83□□□□□ -0.84
USP28-202ENST00000535607 MCM6Q14566 821 aa9.83□□□□□ -0.84
USP28-202ENST00000535607 HLA-CQ95604 372 aa9.83□□□□□ -0.84
USP28-202ENST00000535607 CUX1P39880 1505 aa9.82□□□□□ -0.84
USP28-202ENST00000535607 THSD4Q6ZMP0 1018 aa9.82□□□□□ -0.84
USP28-202ENST00000535607 RTL5Q5HYW3 569 aaPredicted RBP9.81□□□□□ -0.84
USP28-202ENST00000535607 MORN1Q5T089 497 aa9.81□□□□□ -0.84
USP28-202ENST00000535607 WBP1LQ9NX94 342 aa9.81□□□□□ -0.84
USP28-202ENST00000535607 PCDHGC3Q9UN70 934 aa9.81□□□□□ -0.84
USP28-202ENST00000535607 TOPBP1Q92547 1522 aa9.81□□□□□ -0.84
USP28-202ENST00000535607 FMNL1O95466 1100 aaPredicted RBP9.8□□□□□ -0.84
USP28-202ENST00000535607 APLP1P51693 650 aa9.8□□□□□ -0.84
USP28-202ENST00000535607 SLC27A5Q9Y2P5 690 aa9.8□□□□□ -0.84
USP28-202ENST00000535607 URB2Q14146 1524 aaKnown RBP9.8□□□□□ -0.84
USP28-202ENST00000535607 PTPN5P54829 565 aa9.79□□□□□ -0.84
USP28-202ENST00000535607 RETREG3Q86VR2 466 aa9.79□□□□□ -0.84
USP28-202ENST00000535607 USP17L8P0C7I0 530 aa9.78□□□□□ -0.84
USP28-202ENST00000535607 PRR7Q8TB68 274 aa9.78□□□□□ -0.84
USP28-202ENST00000535607 MYT1LQ9UL68 1186 aa9.77□□□□□ -0.85
USP28-202ENST00000535607 COPS2P61201 443 aa9.76□□□□□ -0.85
USP28-202ENST00000535607 PNMA1Q8ND90 353 aa9.76□□□□□ -0.85
USP28-202ENST00000535607 WDR97A6NE52 1622 aa9.75□□□□□ -0.85
USP28-202ENST00000535607 FGD5Q6ZNL6 1462 aa9.75□□□□□ -0.85
USP28-202ENST00000535607 BLOC1S3Q6QNY0 202 aa9.75□□□□□ -0.85
USP28-202ENST00000535607 SCUBE3Q8IX30 993 aa9.75□□□□□ -0.85
USP28-202ENST00000535607 SYMPKQ92797 1274 aaKnown RBP9.75□□□□□ -0.85
USP28-202ENST00000535607 USB1Q9BQ65 265 aaKnown RBP9.75□□□□□ -0.85
USP28-202ENST00000535607 SNRKQ9NRH2 765 aa9.75□□□□□ -0.85
USP28-202ENST00000535607 POLA1P09884 1462 aaPredicted RBP9.74□□□□□ -0.85
USP28-202ENST00000535607 SALL2Q9Y467 1007 aaPredicted RBP9.74□□□□□ -0.85
USP28-202ENST00000535607 A6NJR5 290 aa9.73□□□□□ -0.85
USP28-202ENST00000535607 CFAP99D6REC4 459 aa9.73□□□□□ -0.85
USP28-202ENST00000535607 CLUAP1Q96AJ1 413 aa9.73□□□□□ -0.85
USP28-202ENST00000535607 PCDH10Q9P2E7 1040 aa9.73□□□□□ -0.85
USP28-202ENST00000535607 EEA1Q15075 1411 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms