RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 AI481877A2ALV5 1481 aa15.92■□□□□ 0.14
Clcn3-201ENSMUST00000004430 PrxO55103 1391 aa15.91■□□□□ 0.14
Clcn3-201ENSMUST00000004430 Cfap74Q3UY96 1578 aa15.91■□□□□ 0.14
Clcn3-201ENSMUST00000004430 Rsph3aQ3UFY4 516 aa15.9■□□□□ 0.14
Clcn3-201ENSMUST00000004430 Cc2d1aQ8K1A6 943 aa15.9■□□□□ 0.14
Clcn3-201ENSMUST00000004430 Lemd3Q9WU40 921 aa15.9■□□□□ 0.14
Clcn3-201ENSMUST00000004430 Nsd2Q8BVE8 1365 aa15.89■□□□□ 0.14
Clcn3-201ENSMUST00000004430 G3bp1P97855 465 aaKnown RBP15.89■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Gpatch11Q3UFS4 262 aa15.89■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Gm32742A0A1B0GT42 1604 aa15.89■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Ppp2r3aB2RXC8 1150 aa15.88■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Atxn3Q9CVD2 355 aa15.87■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Rnf17Q99MV7 1640 aa15.87■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Chmp4bQ9D8B3 224 aaKnown RBP15.87■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Tnnt1O88346 262 aa15.86■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Paxip1Q6NZQ4 1056 aa15.86■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Smc5Q8CG46 1101 aaKnown RBP15.86■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Kank1E9Q238 1360 aa15.86■□□□□ 0.13
Clcn3-201ENSMUST00000004430 VgfQ0VGU4 617 aa15.85■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Ssh1Q76I79 1042 aa15.85■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Sall3Q62255 1320 aa15.85■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Ddrgk1Q80WW9 315 aa15.85■□□□□ 0.13
Clcn3-201ENSMUST00000004430 HnrnpuQ8VEK3 800 aaKnown RBP15.85■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Tarbp1E9Q368 1579 aa15.85■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Erbb3Q61526 1339 aa15.85■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Rab3gap2Q8BMG7 1366 aa15.84■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Igf1rQ60751 1373 aa15.83■□□□□ 0.13
Clcn3-201ENSMUST00000004430 Mast1Q9R1L5 1570 aa15.83■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Sptbn5F6UCX4 1208 aa15.83■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Znf608Q56A10 1511 aa15.83■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Nek4Q9Z1J2 792 aa15.83■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Tnnt2P50752 301 aa15.82■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Rnf214Q8BFU3 668 aaKnown RBP15.82■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Cog6Q8R3I3 657 aa15.82■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Rbm10Q99KG3 930 aaKnown RBP15.82■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Mink1Q9JM52 1308 aa15.82■□□□□ 0.12
Clcn3-201ENSMUST00000004430 4933402E13RikQ9D4D2 429 aa15.81■□□□□ 0.12
Clcn3-201ENSMUST00000004430 CgnP59242 1191 aa15.81■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Ythdc2B2RR83 1445 aaKnown RBP15.81■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Triml2E9PW10 424 aa15.81■□□□□ 0.12
Clcn3-201ENSMUST00000004430 MsnP26041 577 aaKnown RBP15.81■□□□□ 0.12
Clcn3-201ENSMUST00000004430 NhsB1AV60 1647 aa15.8■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Samd1D3YXK1 519 aa15.8■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Nol12Q8BG17 217 aa15.8■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Casq1O09165 405 aa15.8■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Iqgap1Q9JKF1 1657 aaKnown RBP15.79■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Atl3Q91YH5 541 aa15.79■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Nkx1-2P42580 305 aa15.79■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Edc4Q3UJB9 1406 aaKnown RBP15.78■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Ppip5k1A2ARP1 1436 aa15.78■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Ubap1lG3UW59 384 aa15.78■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Q4VA45 678 aa15.78■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Abcc3B2RX12 1523 aa15.78■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Rbm25B2RY56 838 aaKnown RBP15.78■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Utp14aQ640M1 767 aaKnown RBP15.77■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Ppp1r9bQ6R891 817 aaKnown RBP15.77■□□□□ 0.12
Clcn3-201ENSMUST00000004430 MccE9PWI3 1003 aa15.77■□□□□ 0.12
Clcn3-201ENSMUST00000004430 Eif4g2Q62448 906 aaKnown RBP15.77■□□□□ 0.12
Clcn3-201ENSMUST00000004430 ErbinQ80TH2 1402 aa15.77■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Ush1cQ9ES64 910 aa15.76■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Becn1O88597 448 aa15.76■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Puf60Q3UEB3 564 aaKnown RBP15.76■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Neurl4Q5NCX5 1563 aa15.76■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Tfip11Q9ERA6 838 aaKnown RBP15.76■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Phactr2B1AVP0 632 aa15.75■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Kif18aQ91WD7 886 aa15.75■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Gtf2a1Q99PM3 378 aa15.75■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Usp54Q8BL06 1588 aaKnown RBP15.75■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Dusp27Q148W8 1138 aa15.75■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Q3TQI7 289 aaKnown RBP15.75■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Hecw1Q8K4P8 1604 aa15.75■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Cdc42bpbQ7TT50 1713 aa15.75■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Chd1P40201 1711 aa15.74■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Ttc21bQ0HA38 1315 aa15.74■□□□□ 0.11
Clcn3-201ENSMUST00000004430 SkilQ60665 675 aa15.74■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Abca8bQ8K440 1620 aa15.74■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Q9D2X8 372 aa15.73■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Kdm5cP41230 1554 aa15.73■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Phf14Q9D4H9 881 aa15.73■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Rtf1A2AQ19 715 aaKnown RBP15.73■□□□□ 0.11
Clcn3-201ENSMUST00000004430 PogkQ80TC5 607 aa15.73■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Stard8Q8K031 1019 aa15.73■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Rrp9Q91WM3 475 aaKnown RBP15.73■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Mcm4P49717 862 aa15.72■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Kiaa1210E9Q0C6 1637 aa15.72■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Gas2l2Q5SSG4 860 aa15.72■□□□□ 0.11
Clcn3-201ENSMUST00000004430 CrebrfQ8CDG5 640 aaKnown RBP15.72■□□□□ 0.11
Clcn3-201ENSMUST00000004430 CenpjQ569L8 1344 aa15.71■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Sox12Q04890 314 aa15.71■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Cep170Q6A065 1588 aa15.71■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Abcc6Q9R1S7 1498 aa15.71■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Kif1bQ60575 1816 aaKnown RBP15.71■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Shq1Q7TMX5 569 aa15.71■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Usp16Q99LG0 825 aa15.71■□□□□ 0.11
Clcn3-201ENSMUST00000004430 Adamts13Q769J6 1426 aa15.7■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Brpf1B2RRD7 1212 aa15.7■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Kiaa0754Q69ZZ9 979 aa15.7■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Fbxo2Q80UW2 297 aa15.7■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Pdcd11Q6NS46 1862 aaKnown RBP15.7■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Aplp1Q03157 653 aa15.68■□□□□ 0.1
Retrieved 100 of 22,080 RNA–protein pairs in 72 ms