RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 KRT10P13645 584 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 CCDC130P13994 396 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 KLRC2P26717 231 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 IL1R2P27930 398 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 FLT3P36888 993 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 MORF4L2Q15014 288 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 WSCD1Q658N2 575 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 RHBDF2Q6PJF5 856 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 DCLRE1AQ6PJP8 1040 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 SLC24A5Q71RS6 500 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 SCUBE3Q8IX30 993 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 SIX6OS1Q8N1H7 587 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 THEM5Q8N1Q8 247 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 FAM172AQ8WUF8 416 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 SYT15Q9BQS2 421 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 HERPUD2Q9BSE4 406 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 DDX23Q9BUQ8 820 aaKnown RBP17.1■□□□□ 0.33
LDB3-208ENST00000623007 NME7Q9Y5B8 376 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 NFS1Q9Y697 457 aa17.1■□□□□ 0.33
LDB3-208ENST00000623007 DAB1O75553 588 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 INHAP05111 366 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 CKBP12277 381 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 TCF4P15884 667 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 TYMPP19971 482 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 IVDP26440 423 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 ATP5DP30049 168 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 MATKP42679 507 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 SCNN1GP51170 649 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 CLCNKBP51801 687 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 CDH6P55285 790 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 BFSP2Q13515 415 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 UAP1Q16222 522 aaPredicted RBP17.09■□□□□ 0.33
LDB3-208ENST00000623007 ERMARDQ5T6L9 678 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 GLB1LQ6UWU2 654 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 BZW1Q7L1Q6 419 aaKnown RBP17.09■□□□□ 0.33
LDB3-208ENST00000623007 ECHDC2Q86YB7 292 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 RFX6Q8HWS3 928 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 FUKQ8N0W3 1084 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 SCML4Q8N228 414 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 TMEM130Q8N3G9 435 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 URGCPQ8TCY9 931 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 SMARCD1Q96GM5 515 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 TTC25Q96NG3 672 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 MED10Q9BTT4 135 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 CALN1Q9BXU9 219 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 PNPLA8Q9NP80 782 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 NGRNQ9NPE2 291 aaKnown RBP17.09■□□□□ 0.33
LDB3-208ENST00000623007 CNGB3Q9NQW8 809 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.09■□□□□ 0.33
LDB3-208ENST00000623007 PCSK1NQ9UHG2 260 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 DNPEPQ9ULA0 475 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 PHF24Q9UPV7 400 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 SHOC2Q9UQ13 582 aa17.09■□□□□ 0.33
LDB3-208ENST00000623007 DNALI1O14645 258 aaPredicted RBP17.08■□□□□ 0.32
LDB3-208ENST00000623007 GRK4P32298 578 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 NOS2P35228 1153 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 ZNF135P52742 658 aaPredicted RBP17.08■□□□□ 0.32
LDB3-208ENST00000623007 MRPS5P82675 430 aaKnown RBP17.08■□□□□ 0.32
LDB3-208ENST00000623007 SKOR1P84550 965 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 SLC25A52Q3SY17 297 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 C6orf118Q5T5N4 469 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 ZNF618Q5T7W0 954 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 PIGZQ86VD9 579 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 MYCBPAPQ8TBZ2 947 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 RSAD2Q8WXG1 361 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 HSPH1Q92598 858 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 P3H4Q92791 437 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 CCDC77Q9BR77 488 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 C11orf84Q9BUA3 381 aaPredicted RBP17.08■□□□□ 0.32
LDB3-208ENST00000623007 PPCSQ9HAB8 311 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 KLHL11Q9NVR0 708 aa17.08■□□□□ 0.32
LDB3-208ENST00000623007 TPX2Q9ULW0 747 aaKnown RBP17.08■□□□□ 0.32
LDB3-208ENST00000623007 A0A1W2PQ45 241 aaPredicted RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 A0A1W2PQY0 241 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 M0QZQ0 153 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 PARNO95453 639 aaKnown RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 IVLP07476 585 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 ACTN2P35609 894 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 NR2C2P49116 596 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 ARSEP51690 589 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 ITGA8P53708 1063 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 YWHAZP63104 245 aaKnown RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 OTUD4Q01804 1114 aaKnown RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 ZNF844Q08AG5 666 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 DPYSL2Q16555 572 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 SMTNL2Q2TAL5 461 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 IZUMO3Q5VZ72 239 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 TXNRD3NBQ6F5E7 133 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 HIBCHQ6NVY1 386 aaPredicted RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 ZNF598Q86UK7 904 aaKnown RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 OSTM1Q86WC4 334 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 ZCCHC9Q8N567 271 aaKnown RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 ACTL9Q8TC94 416 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 RIN2Q8WYP3 895 aaPredicted RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 IRGQQ8WZA9 623 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 PGM2Q96G03 612 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 RNF157Q96PX1 679 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 SLC9A7Q96T83 725 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 FRMD8Q9BZ67 464 aaPredicted RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 ELAC1Q9H777 363 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms