RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 KLHDC10Q6PID8 442 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 TMC7Q7Z402 723 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 GPD1LQ8N335 351 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 TAB3Q8N5C8 712 aaPredicted RBP17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 RSAD2Q8WXG1 361 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 CATSPER2Q96P56 530 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 SMYD3Q9H7B4 428 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 MKS1Q9NXB0 559 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 A0A0B4J269 797 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 POLRMTO00411 1230 aaKnown RBP17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 DENRO43583 198 aaKnown RBP17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 FAM163BP0C2L3 166 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 TPP2P29144 1249 aaPredicted RBP17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 CLDN10P78369 228 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 TCP10Q12799 353 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 TUBB3Q13509 450 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 ABCB5Q2M3G0 1257 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 RALGPS1Q5JS13 557 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 ANGEL2Q5VTE6 544 aaKnown RBP17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 SPOPLQ6IQ16 392 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 TMEM270Q6UE05 265 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 NUDCD3Q8IVD9 361 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 ALDH16A1Q8IZ83 802 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 ICA1LQ8NDH6 482 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 TEKT1Q969V4 418 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 MCEEQ96PE7 176 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 COA1Q9GZY4 146 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 PNPLA8Q9NP80 782 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 RHBDL2Q9NX52 303 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 MAD1L1Q9Y6D9 718 aa17.79■□□□□ 0.44
SQSTM1-211ENST00000506690 CCDC195A0A1B0GUA6 201 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 CYB561D2O14569 222 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 WEE2P0C1S8 567 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 STAT2P52630 851 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 DYNLT1P63172 113 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 IRX4P78413 519 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 SULT2A1Q06520 285 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 SNAPC2Q13487 334 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 ZACNQ401N2 412 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 FAM102BQ5T8I3 360 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 OLFML2BQ68BL8 750 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 C1orf228Q6PIY5 440 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 SH3BP5LQ7L8J4 393 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 METTL25Q8N6Q8 603 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 TTC13Q8NBP0 860 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 ACTRT2Q8TDY3 377 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 KCNH7Q9NS40 1196 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 PKD2L1Q9P0L9 805 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 ZNF180Q9UJW8 692 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 PCDHB4Q9Y5E5 795 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 ASTN2O75129 1339 aaPredicted RBP17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 TXNDC9O14530 226 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 STRNO43815 780 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 BBOX1O75936 387 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 SORBS2O94875 1100 aaKnown RBP17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 CLPTM1O96005 669 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 HLA-DRAP01903 254 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 SNRPAP09012 282 aaKnown RBP17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 CDK4P11802 303 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 FDFT1P37268 417 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 SPP2Q13103 211 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 MTMR2Q13614 643 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 CUL2Q13617 745 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 PIGHQ14442 188 aaPredicted RBP17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 TLR1Q15399 786 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 RABGAP1LQ5R372 815 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 OGFRL1Q5TC84 451 aaPredicted RBP17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 UNC45BQ8IWX7 931 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 NLRP4Q96MN2 994 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 TIMMDC1Q9NPL8 285 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 CDH22Q9UJ99 828 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 CNTN6Q9UQ52 1028 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 PCDHGA4Q9Y5G9 962 aa17.78■□□□□ 0.44
SQSTM1-211ENST00000506690 SLX4Q8IY92 1834 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 H3BNX3 289 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 RFPL1O75677 317 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 KRT37O76014 449 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 RAG1P15918 1043 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 CACNB3P54284 484 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 JAG1P78504 1218 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 BBS12Q6ZW61 710 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 POLNQ7Z5Q5 900 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 NIPA2Q8N8Q9 360 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 SIKE1Q9BRV8 207 aa17.77■□□□□ 0.44
SQSTM1-211ENST00000506690 SF3B1O75533 1304 aaKnown RBP eCLIP17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 RIMBP2O15034 1052 aa17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 CST8O60676 142 aa17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 STK10O94804 968 aaKnown RBP17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 APBA3O96018 575 aa17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 EPHB1P54762 984 aa17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 YWHAGP61981 247 aaKnown RBP eCLIP17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 BASP1P80723 227 aaKnown RBP17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 SFSWAPQ12872 951 aaKnown RBP17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 NADK2Q4G0N4 442 aa17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 TDRD10Q5VZ19 366 aaKnown RBP17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 PPP1R14BQ96C90 147 aa17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 FAM213AQ9BRX8 229 aa17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 PLK2Q9NYY3 685 aa17.77■□□□□ 0.43
SQSTM1-211ENST00000506690 ITGA11Q9UKX5 1188 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms