RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 JAMLQ86YT9 394 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 STK32AQ8WU08 396 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 COPS5Q92905 334 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 PHACTR1Q9C0D0 580 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 HIPK3Q9H422 1215 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 FZD8Q9H461 694 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 KIF3CO14782 793 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 C22orf31O95567 290 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 RGS4P49798 205 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 MBTD1Q05BQ5 628 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 ARHGAP1Q07960 439 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.19□□□□□ -0.14
LDLR-201ENST00000252444 A0A087X0T9 212 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 E5RI56 91 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 OPHN1O60890 802 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 FAM228BP0C875 321 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 GLRA4Q5JXX5 417 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 FBXO22Q8NEZ5 403 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 TRIM15Q9C019 465 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 ABCB6Q9NP58 842 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 PSMC3IPQ9P2W1 217 aaPredicted RBP14.19□□□□□ -0.14
LDLR-201ENST00000252444 PCDHA3Q9Y5H8 950 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 TACC3Q9Y6A5 838 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 ZNF536O15090 1300 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 CST8O60676 142 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 MAPRE2Q15555 327 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 KCNA10Q16322 511 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 LRRC40Q9H9A6 602 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 PCDH9Q9HC56 1237 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 SPG21Q9NZD8 308 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 BUB1BO60566 1050 aaPredicted RBP14.18□□□□□ -0.14
LDLR-201ENST00000252444 UGCGQ16739 394 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 CDCA2Q69YH5 1023 aaPredicted RBP14.18□□□□□ -0.14
LDLR-201ENST00000252444 SKA2Q8WVK7 121 aaPredicted RBP14.18□□□□□ -0.14
LDLR-201ENST00000252444 ADGRE3Q9BY15 652 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 KCNF1Q9H3M0 494 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 ACTR5Q9H9F9 607 aaPredicted RBP14.18□□□□□ -0.14
LDLR-201ENST00000252444 PGAP2Q9UHJ9 254 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 SLC30A1Q9Y6M5 507 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 CHD4Q14839 1912 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 H0Y626 953 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 EDNRBP24530 442 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 CDK16Q00536 496 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 ARSHQ5FYA8 562 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 RAPGEF5Q92565 580 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 PCDHGC3Q9UN70 934 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 EFR3BQ9Y2G0 817 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 SRGAP2O75044 1071 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 STAU1O95793 577 aaKnown RBP14.18□□□□□ -0.14
LDLR-201ENST00000252444 KLRC2P26717 231 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 PCK1P35558 622 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 ITGA9Q13797 1035 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 KRT33BQ14525 404 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 RMDN1Q96DB5 314 aa14.18□□□□□ -0.14
LDLR-201ENST00000252444 ARVCFO00192 962 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 TSPAN1O60635 241 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 LTFP02788 710 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 RBP3P10745 1247 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 GRM3Q14832 879 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 NPY5RQ15761 445 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 TTLL9Q3SXZ7 439 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 REXO1L1PQ8IX06 675 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 GIMAP7Q8NHV1 300 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 TRAPPC12Q8WVT3 735 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 LENG9Q96B70 501 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 SGSM3Q96HU1 749 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 SNX27Q96L92 541 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 UBE2OQ9C0C9 1292 aaKnown RBP14.17□□□□□ -0.14
LDLR-201ENST00000252444 DDX47Q9H0S4 455 aaKnown RBP14.17□□□□□ -0.14
LDLR-201ENST00000252444 TRIM45Q9H8W5 580 aaPredicted RBP14.17□□□□□ -0.14
LDLR-201ENST00000252444 ZFATQ9P243 1243 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 GTF2IRD1Q9UHL9 959 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 SHOC2Q9UQ13 582 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 WARSP23381 471 aaKnown RBP14.17□□□□□ -0.14
LDLR-201ENST00000252444 CLCN6P51797 869 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 C9orf57Q5W0N0 161 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 TBC1D1Q86TI0 1168 aaPredicted RBP14.17□□□□□ -0.14
LDLR-201ENST00000252444 TEKT4Q8WW24 435 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 LRRC39Q96DD0 335 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 C11orf49Q9H6J7 331 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 COL20A1Q9P218 1284 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 APOBEC2Q9Y235 224 aaKnown RBP14.17□□□□□ -0.14
LDLR-201ENST00000252444 PKP3Q9Y446 797 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 TRAV19A0A0A6YYK7 116 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 CASTOR2A6NHX0 329 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 C2orf81A6NN90 581 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 CRTAMO95727 393 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 RHOCP08134 193 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 EPHB2P29323 1055 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 PMS1P54277 932 aaKnown RBP14.17□□□□□ -0.14
LDLR-201ENST00000252444 MAP3K7CLP57077 242 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 ZNF211Q13398 564 aaPredicted RBP14.17□□□□□ -0.14
LDLR-201ENST00000252444 RXFP2Q8WXD0 754 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 CCDC126Q96EE4 140 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 SERPINI1Q99574 410 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 CENPKQ9BS16 269 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 L2HGDHQ9H9P8 463 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 PDGFCQ9NRA1 345 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 ARHGAP20Q9P2F6 1191 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 ABHD14A-ACY1A0A1B0GW23 586 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms