RNA–Protein interactions for RNA: YBR278W

DPB3, Transcript of Third-largest subunit of DNA polymerase II (DNA polymerase epsilon), yeast

Gene DPB3, Length 606 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DPB3	YBR278W	YCR095W-A	Q3E787	52 aa		0.96	□□□□□ -2.26
DPB3	YBR278W	ULS1	Q08562	1619 aa		0.96	□□□□□ -2.26
DPB3	YBR278W	HAP1	P0CE41	1502 aa		0.95	□□□□□ -2.26
DPB3	YBR278W	MYO4	P32492	1471 aa		0.95	□□□□□ -2.26
DPB3	YBR278W	SHU1	P38751	150 aa		0.95	□□□□□ -2.26
DPB3	YBR278W	YHR173C	P38864	112 aa		0.95	□□□□□ -2.26
DPB3	YBR278W	TOP2	P06786	1428 aa	Known RBP	0.95	□□□□□ -2.26
DPB3	YBR278W	TY2B-B	Q12491	1770 aa		0.95	□□□□□ -2.26
DPB3	YBR278W	BCK1	Q01389	1478 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	MMS22	Q06164	1454 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	BUD3	P25558	1636 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	TY1B-JR2	P47100	1755 aa	Known RBP	0.94	□□□□□ -2.26
DPB3	YBR278W	TY1B-ER2	Q03619	1755 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	TY1B-MR1	Q04214	1755 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	TY1B-MR2	Q04670	1755 aa	Known RBP	0.94	□□□□□ -2.26
DPB3	YBR278W	TY1B-LR1	Q12088	1755 aa	Known RBP	0.94	□□□□□ -2.26
DPB3	YBR278W	TY1B-NL1	Q12112	1755 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	TY1B-GR1	Q12141	1755 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	TY1B-BL	Q12490	1755 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	PAU5	P43575	122 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	TY3B-G	Q99315	1547 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	YRF1-2	P40105	1681 aa		0.94	□□□□□ -2.26
DPB3	YBR278W	IML1	P47170	1584 aa		0.93	□□□□□ -2.26
DPB3	YBR278W	SNA2	P56508	79 aa		0.93	□□□□□ -2.26
DPB3	YBR278W	YDR010C	Q12426	110 aa		0.93	□□□□□ -2.26
DPB3	YBR278W	KSH1	Q8TGJ3	72 aa		0.93	□□□□□ -2.26
DPB3	YBR278W	MLP2	P40457	1679 aa		0.93	□□□□□ -2.26
DPB3	YBR278W	STU1	P38198	1513 aa		0.93	□□□□□ -2.26
DPB3	YBR278W	TY1B-DR3	Q99231	1755 aa		0.93	□□□□□ -2.26
DPB3	YBR278W	CAT8	P39113	1433 aa		0.92	□□□□□ -2.26
DPB3	YBR278W	ROX3	P25046	220 aa		0.92	□□□□□ -2.26
DPB3	YBR278W	MRX7	P53869	86 aa		0.92	□□□□□ -2.26
DPB3	YBR278W	COX12	Q01519	83 aa		0.92	□□□□□ -2.26
DPB3	YBR278W	YBR072C-A	Q3E794	53 aa		0.92	□□□□□ -2.26
DPB3	YBR278W	PDR12	Q02785	1511 aa		0.92	□□□□□ -2.26
DPB3	YBR278W	SEC7	P11075	2009 aa	Known RBP	0.92	□□□□□ -2.26
DPB3	YBR278W	TEL1	P38110	2787 aa		0.92	□□□□□ -2.26
DPB3	YBR278W	IQG1	Q12280	1495 aa		0.92	□□□□□ -2.26
DPB3	YBR278W	VMR1	P38735	1592 aa		0.91	□□□□□ -2.26
DPB3	YBR278W	YBT1	P32386	1661 aa		0.91	□□□□□ -2.26
DPB3	YBR278W	SRB8	P25648	1427 aa		0.91	□□□□□ -2.26
DPB3	YBR278W	YOR289W	Q12012	251 aa	Predicted RBP	0.91	□□□□□ -2.26
DPB3	YBR278W	COX19	Q3E731	98 aa		0.91	□□□□□ -2.26
DPB3	YBR278W	GCN2	P15442	1659 aa		0.91	□□□□□ -2.26
DPB3	YBR278W	GCN1	P33892	2672 aa	Known RBP	0.91	□□□□□ -2.26
DPB3	YBR278W	URA2	P07259	2214 aa	Known RBP	0.91	□□□□□ -2.26
DPB3	YBR278W	VTH1	P40438	1549 aa		0.9	□□□□□ -2.26
DPB3	YBR278W	VTH2	P40890	1549 aa		0.9	□□□□□ -2.26
DPB3	YBR278W	TOR2	P32600	2474 aa	Known RBP	0.9	□□□□□ -2.27
DPB3	YBR278W	MPC2	P38857	129 aa		0.9	□□□□□ -2.27
DPB3	YBR278W	POL1	P13382	1468 aa		0.9	□□□□□ -2.27
DPB3	YBR278W	NUP188	P52593	1655 aa	Known RBP	0.9	□□□□□ -2.27
DPB3	YBR278W	SMC4	Q12267	1418 aa		0.89	□□□□□ -2.27
DPB3	YBR278W	PDR5	P33302	1511 aa	Known RBP	0.89	□□□□□ -2.27
DPB3	YBR278W	TY4B-H	P0C2J7	1802 aa		0.89	□□□□□ -2.27
DPB3	YBR278W	PAU6	P0CE90	120 aa		0.89	□□□□□ -2.27
DPB3	YBR278W	PAU18	P0CE91	120 aa		0.89	□□□□□ -2.27
DPB3	YBR278W	ZEO1	Q08245	113 aa		0.89	□□□□□ -2.27
DPB3	YBR278W	YPL225W	Q08971	146 aa	Known RBP	0.89	□□□□□ -2.27
DPB3	YBR278W	PRP8	P33334	2413 aa	Known RBP	0.89	□□□□□ -2.27
DPB3	YBR278W	SNF2	P22082	1703 aa		0.89	□□□□□ -2.27
DPB3	YBR278W	SSN2	P38931	1420 aa		0.89	□□□□□ -2.27
DPB3	YBR278W	YSP2	Q06681	1438 aa		0.89	□□□□□ -2.27
DPB3	YBR278W	YBL071C	P38185	102 aa		0.88	□□□□□ -2.27
DPB3	YBR278W	YHL005C	P38752	130 aa		0.88	□□□□□ -2.27
DPB3	YBR278W	TOM1	Q03280	3268 aa		0.88	□□□□□ -2.27
DPB3	YBR278W	TAO3	P40468	2376 aa		0.88	□□□□□ -2.27
DPB3	YBR278W	RSF2	P46974	1380 aa		0.87	□□□□□ -2.27
DPB3	YBR278W	MRP17	P28778	131 aa		0.87	□□□□□ -2.27
DPB3	YBR278W	EMC5	P40540	141 aa		0.87	□□□□□ -2.27
DPB3	YBR278W	SNQ2	P32568	1501 aa	Known RBP	0.87	□□□□□ -2.27
DPB3	YBR278W	HMRA1	P0CY11	126 aa		0.86	□□□□□ -2.27
DPB3	YBR278W	ICY1	Q04329	127 aa		0.86	□□□□□ -2.27
DPB3	YBR278W	RRT15	Q3E811	62 aa		0.86	□□□□□ -2.27
DPB3	YBR278W	YNR034W-A	Q3E841	98 aa		0.86	□□□□□ -2.27
DPB3	YBR278W	UTP20	P35194	2493 aa	Known RBP	0.86	□□□□□ -2.27
DPB3	YBR278W	CUP1-1	P0CX80	61 aa		0.85	□□□□□ -2.27
DPB3	YBR278W	CUP1-2	P0CX81	61 aa		0.85	□□□□□ -2.27
DPB3	YBR278W	MRPL38	P35996	138 aa	Predicted RBP	0.85	□□□□□ -2.27
DPB3	YBR278W	FMP27	Q06179	2628 aa		0.85	□□□□□ -2.27
DPB3	YBR278W	YOL164W-A	Q3E7A5	60 aa		0.85	□□□□□ -2.27
DPB3	YBR278W	RPA12	P32529	125 aa	Known RBP	0.84	□□□□□ -2.27
DPB3	YBR278W	YBR292C	P38357	123 aa		0.84	□□□□□ -2.27
DPB3	YBR278W	PAU20	Q08322	120 aa		0.84	□□□□□ -2.27
DPB3	YBR278W	RPS11A	P0CX47	156 aa	Known RBP	0.83	□□□□□ -2.28
DPB3	YBR278W	RPS11B	P0CX48	156 aa	Known RBP	0.83	□□□□□ -2.28
DPB3	YBR278W	MSL1	P40567	111 aa	Predicted RBP	0.83	□□□□□ -2.28
DPB3	YBR278W	RRP5	Q05022	1729 aa	Known RBP	0.83	□□□□□ -2.28
DPB3	YBR278W	VPS13	Q07878	3144 aa		0.82	□□□□□ -2.28
DPB3	YBR278W	AIM19	P40502	157 aa		0.82	□□□□□ -2.28
DPB3	YBR278W	SPC1	P46965	94 aa		0.82	□□□□□ -2.28
DPB3	YBR278W	NHP10	Q03435	203 aa		0.82	□□□□□ -2.28
DPB3	YBR278W	PAU1	P0CE88	120 aa		0.81	□□□□□ -2.28
DPB3	YBR278W	PAU14	P0CE89	120 aa		0.81	□□□□□ -2.28
DPB3	YBR278W	PAU8	P0CE92	120 aa		0.81	□□□□□ -2.28
DPB3	YBR278W	PAU11	P0CE93	120 aa		0.81	□□□□□ -2.28
DPB3	YBR278W	PAU13	P38725	120 aa		0.81	□□□□□ -2.28
DPB3	YBR278W	PAU10	Q03050	120 aa		0.81	□□□□□ -2.28
DPB3	YBR278W	PAU9	Q3E770	120 aa		0.81	□□□□□ -2.28
DPB3	YBR278W	RPS29B	P41058	56 aa	Known RBP	0.8	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 46.3 ms