RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 OPLAHO14841 1288 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 AKAP10O43572 662 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 SUPT20HL2P0C7V6 817 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 VDRP11473 427 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 XRCC4Q13426 336 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 SV2CQ496J9 727 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 PCNX4Q63HM2 1172 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 RNF43Q68DV7 783 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 SLC30A10Q6XR72 485 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 MCOLN2Q8IZK6 566 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 ABRAQ8N0Z2 381 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 ZNF384Q8TF68 577 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 PDCD2LQ9BRP1 358 aa14.33□□□□□ -0.11
SYNPO-205ENST00000522122 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.33□□□□□ -0.11
SYNPO-205ENST00000522122 COL1A1P02452 1464 aaPredicted RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 SEC24DO94855 1032 aaPredicted RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 MAP3K6O95382 1288 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 LSM8O95777 96 aaKnown RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 VIL1P09327 827 aaKnown RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 EN1Q05925 392 aaPredicted RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 PDAP1Q13442 181 aaKnown RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 RNF219Q5W0B1 726 aaPredicted RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 IFNEQ86WN2 208 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 CCNJLQ8IV13 435 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 NAF1Q96HR8 494 aaKnown RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 AVENQ9NQS1 362 aaPredicted RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 RNF181Q9P0P0 153 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 GLRA3O75311 464 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 SPATA31C1P0DKV0 1188 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 PTPN4P29074 926 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 PDK2Q15119 407 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 RBBP7Q16576 425 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 TLCD1Q96CP7 247 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 DCLRE1BQ9H816 532 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 ACTL7BQ9Y614 415 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 MEIS2O14770 477 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 PCSK1P29120 753 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 HDAC4P56524 1084 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 NLRP11P59045 1033 aaKnown RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 C1QBPQ07021 282 aaKnown RBP14.33□□□□□ -0.12
SYNPO-205ENST00000522122 IPMKQ8NFU5 416 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 PPP1R2P1Q96PQ5 205 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 NAT9Q9BTE0 207 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 LRRC19Q9H756 370 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 CISHQ9NSE2 258 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 PKD2L2Q9NZM6 624 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 ARHGAP26Q9UNA1 814 aa14.33□□□□□ -0.12
SYNPO-205ENST00000522122 TCN1P20061 433 aaPredicted RBP14.32□□□□□ -0.12
SYNPO-205ENST00000522122 ATXN3P54252 364 aaPredicted RBP14.32□□□□□ -0.12
SYNPO-205ENST00000522122 SLC26A11Q86WA9 606 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 SYTL5Q8TDW5 730 aaPredicted RBP14.32□□□□□ -0.12
SYNPO-205ENST00000522122 MYLK2Q9H1R3 596 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 AGO4Q9HCK5 861 aaKnown RBP14.32□□□□□ -0.12
SYNPO-205ENST00000522122 LRRC4BQ9NT99 713 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.32□□□□□ -0.12
SYNPO-205ENST00000522122 GGA3Q9NZ52 723 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 TSR3Q9UJK0 312 aaKnown RBP14.32□□□□□ -0.12
SYNPO-205ENST00000522122 UBTFL6P0CB48 400 aaPredicted RBP14.32□□□□□ -0.12
SYNPO-205ENST00000522122 SLC9A9Q8IVB4 645 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 GALNT4Q8N4A0 578 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 MKL1Q969V6 931 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 THAP11Q96EK4 314 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 CNPY3Q9BT09 278 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 ILKAPQ9H0C8 392 aaPredicted RBP14.32□□□□□ -0.12
SYNPO-205ENST00000522122 LMCD1Q9NZU5 365 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 PLIN4Q96Q06 1357 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 TRPM3Q9HCF6 1732 aaPredicted RBP14.32□□□□□ -0.12
SYNPO-205ENST00000522122 TM9SF1O15321 606 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 CSPG5O95196 566 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 C6orf10Q5SRN2 563 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 SLFN11Q7Z7L1 901 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 PCDH9Q9HC56 1237 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 KCNQ5Q9NR82 932 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 WDR70Q9NW82 654 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 IFNA8P32881 189 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 ORC1Q13415 861 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 MPZL3Q6UWV2 235 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 SHCBP1LQ9BZQ2 653 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 DPP3Q9NY33 737 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 SHOC2Q9UQ13 582 aa14.32□□□□□ -0.12
SYNPO-205ENST00000522122 CYP2C9P11712 490 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 EPHB2P29323 1055 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 HMOX2P30519 316 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 GMPSP49915 693 aaPredicted RBP14.31□□□□□ -0.12
SYNPO-205ENST00000522122 MYL6P60660 151 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 LAMB3Q13751 1172 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 SAMD7Q7Z3H4 446 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 MTDHQ86UE4 582 aaKnown RBP14.31□□□□□ -0.12
SYNPO-205ENST00000522122 EPS8L1Q8TE68 723 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 SLC38A7Q9NVC3 462 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 POLIQ9UNA4 740 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 STXBP5LQ9Y2K9 1186 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 C5orf60A6NFR6 353 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 DGKIO75912 1065 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 TMCC1O94876 653 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 APOA4P06727 396 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 GCNT1Q02742 428 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 NUP93Q8N1F7 819 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 PIK3R5Q8WYR1 880 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 STARD13Q9Y3M8 1113 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms