RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 AP3M2P53677 418 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 CACNA2D1P54289 1103 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 CDH8P55286 799 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 TNNC1P63316 161 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 SRSF5Q13243 272 aaKnown RBP13.33□□□□□ -0.28
PDPN-208ENST00000509009 SIM2Q14190 667 aaPredicted RBP13.33□□□□□ -0.28
PDPN-208ENST00000509009 PUM1Q14671 1186 aaKnown RBP eCLIP13.33□□□□□ -0.28
PDPN-208ENST00000509009 MTF1Q14872 753 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 ZNF77Q15935 545 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 LPAL2Q16609 132 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 PKN3Q6P5Z2 889 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 LONP2Q86WA8 852 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 SLC9A9Q8IVB4 645 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 KIAA0895Q8NCT3 520 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 SH3RF2Q8TEC5 729 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 OSCP1Q8WVF1 389 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 SYAP1Q96A49 352 aaPredicted RBP13.33□□□□□ -0.28
PDPN-208ENST00000509009 B3GNT5Q9BYG0 378 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 KCTD10Q9H3F6 313 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 DPEP3Q9H4B8 488 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 ECT2Q9H8V3 914 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 VRTNQ9H8Y1 702 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 EXOC1Q9NV70 894 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 TMEM30AQ9NV96 361 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 TRPM5Q9NZQ8 1165 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 USP25Q9UHP3 1055 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 RAB23Q9ULC3 237 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 HPSEQ9Y251 543 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 SDK1Q7Z5N4 2213 aa13.33□□□□□ -0.28
PDPN-208ENST00000509009 NCOR2Q9Y618 2525 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 LRRIQ3A6PVS8 624 aaPredicted RBP13.32□□□□□ -0.28
PDPN-208ENST00000509009 A8MXQ7 604 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 CLDN5O00501 218 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 PDXKO00764 312 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 TRIM66O15016 1216 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 VNN1O95497 513 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 EGFP01133 1207 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 PFKLP17858 780 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 IFNAR2P48551 515 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 NOP14P78316 857 aaKnown RBP13.32□□□□□ -0.28
PDPN-208ENST00000509009 ZXDBP98169 803 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 USP4Q13107 963 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 KCNB1Q14721 858 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 RSPO4Q2I0M5 234 aaPredicted RBP13.32□□□□□ -0.28
PDPN-208ENST00000509009 EML3Q32P44 896 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 TDRD10Q5VZ19 366 aaKnown RBP13.32□□□□□ -0.28
PDPN-208ENST00000509009 NAIF1Q69YI7 327 aaPredicted RBP13.32□□□□□ -0.28
PDPN-208ENST00000509009 LAIR1Q6GTX8 287 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 CPA6Q8N4T0 437 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 TTC16Q8NEE8 873 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 ZNF518BQ9C0D4 1074 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 RNF38Q9H0F5 515 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 PARD6AQ9NPB6 346 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 EHD2Q9NZN4 543 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 GMEB2Q9UKD1 530 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 ARHGAP26Q9UNA1 814 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 WNT6Q9Y6F9 365 aa13.32□□□□□ -0.28
PDPN-208ENST00000509009 SPTBN2O15020 2390 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 ZNF638Q14966 1978 aaKnown RBP13.31□□□□□ -0.28
PDPN-208ENST00000509009 FAM237AA0A1B0GTK4 181 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 ATG13O75143 517 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 MYL1P05976 194 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 RETP07949 1114 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 DRD1P21728 446 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 PPP3CCP48454 512 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 PDE6CP51160 858 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 DLG4P78352 724 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 TAF10Q12962 218 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 NR1H3Q13133 447 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 BIRC3Q13489 604 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 NCOA4Q13772 614 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 ZNF667Q5HYK9 610 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 PRR23BQ6ZRT6 265 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 PAQR9Q6ZVX9 377 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 DGLUCYQ7Z3D6 616 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 WDR5BQ86VZ2 330 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 B3GALNT2Q8NCR0 500 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 TMC2Q8TDI7 906 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 ELMO3Q96BJ8 720 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 SPATA32Q96LK8 384 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 P2RY13Q9BPV8 354 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 SDCBP2Q9H190 292 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 SMYD3Q9H7B4 428 aa13.31□□□□□ -0.28
PDPN-208ENST00000509009 POLR3BQ9NW08 1133 aaPredicted RBP13.31□□□□□ -0.28
PDPN-208ENST00000509009 ATG2BQ96BY7 2078 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 KIF26AQ9ULI4 1882 aaPredicted RBP13.3□□□□□ -0.28
PDPN-208ENST00000509009 LEFTY2O00292 366 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 RNF40O75150 1001 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 NR3C1P04150 777 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 RPN1P04843 607 aaKnown RBP13.3□□□□□ -0.28
PDPN-208ENST00000509009 SYKP43405 635 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 PXNP49023 591 aaPredicted RBP13.3□□□□□ -0.28
PDPN-208ENST00000509009 NDUFA8P51970 172 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 KRT85P78386 507 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 SLC7A9P82251 487 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 SPEM2Q0P670 501 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 SGSM1Q2NKQ1 1148 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 ZNF699Q32M78 642 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 ZACNQ401N2 412 aa13.3□□□□□ -0.28
PDPN-208ENST00000509009 C1orf220Q5T0J3 134 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms