RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 GALNT2Q10471 571 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 MRPL49Q13405 166 aaKnown RBP5.24□□□□□ -1.57
VPS13A-212ENST00000493341 BOP1Q14137 746 aaKnown RBP5.24□□□□□ -1.57
VPS13A-212ENST00000493341 ERV3-1Q14264 604 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 USP10Q14694 798 aaKnown RBP5.24□□□□□ -1.57
VPS13A-212ENST00000493341 FAM214AQ32MH5 1076 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 PRR31Q5SQ13 230 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 BBS12Q6ZW61 710 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 ANKS1BQ7Z6G8 1248 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 IGDCC3Q8IVU1 814 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 NSUN7Q8NE18 718 aaKnown RBP5.24□□□□□ -1.57
VPS13A-212ENST00000493341 ADAMTS15Q8TE58 950 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 WDR60Q8WVS4 1066 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 PPP2R3CQ969Q6 453 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 ENKD1Q9H0I2 346 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 CCDC68Q9H2F9 335 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 G6PC2Q9NQR9 355 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 FSCN3Q9NQT6 498 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 NSMCE4AQ9NXX6 385 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 PI4KBQ9UBF8 816 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 TBX20Q9UMR3 447 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 DNAJC16Q9Y2G8 782 aa5.24□□□□□ -1.57
VPS13A-212ENST00000493341 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 UBE2QL1A1L167 161 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 TBKBP1A7MCY6 615 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 DCLK1O15075 740 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 SRGAP2O75044 1071 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 STC2O76061 302 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ITGB1P05556 798 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 GLI1P08151 1106 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 KCNC1P48547 511 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 PXNP49023 591 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 PRKAG1P54619 331 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 LILRA4P59901 499 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ARF3P61204 181 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ARF1P84077 181 aaKnown RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ATP1A4Q13733 1029 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 GPR68Q15743 365 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ZMAT1Q5H9K5 638 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ATXN7L2Q5T6C5 722 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 TTC22Q5TAA0 569 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ABLIM2Q6H8Q1 611 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 LAYNQ6UX15 382 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 TTC30AQ86WT1 665 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 REXO1L1PQ8IX06 675 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 TMEFF1Q8IYR6 380 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 BPIFB1Q8TDL5 484 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 KCNG4Q8TDN1 519 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 HMGB4Q8WW32 186 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 PHACTR3Q96KR7 559 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 FAM227BQ96M60 508 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 PWWP2AQ96N64 755 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 SPATA25Q9BR10 227 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 SGPP1Q9BX95 441 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 TLR10Q9BXR5 811 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 SLC46A2Q9BY10 475 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 MBD1Q9UIS9 605 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 SHOC2Q9UQ13 582 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 MRPS17Q9Y2R5 130 aaKnown RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 CYP46A1Q9Y6A2 500 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 KIF28PB7ZC32 967 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 HOXA3O43365 443 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ADAM23O75077 832 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ADAMTS4O75173 837 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 CYP1A1P04798 512 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 SLC3A2P08195 630 aaKnown RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 CHMP24386 653 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 SLC5A2P31639 672 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 PGM1P36871 562 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 STAT1P42224 750 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 CCT4P50991 539 aaKnown RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 EPHB3P54753 998 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ADAM8P78325 824 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 HGFACQ04756 655 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 KCNMB1Q16558 191 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 BMT2Q1RMZ1 405 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ZIK1Q3SY52 487 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 CTXN3Q4LDR2 81 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 MPZL3Q6UWV2 235 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ANKRD23Q86SG2 305 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ARMC8Q8IUR7 673 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 RNF169Q8NCN4 708 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 ABHD5Q8WTS1 349 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 TFAP2CQ92754 450 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 RSPH9Q9H1X1 276 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 GHITMQ9H3K2 345 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 BARX1Q9HBU1 254 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-212ENST00000493341 NKIRAS2Q9NYR9 191 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 CNTN6Q9UQ52 1028 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 CDYLQ9Y232 598 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 PMF1-BGLAPU3KQ54 211 aa5.23□□□□□ -1.57
VPS13A-212ENST00000493341 FAM90A18PA6NE21 464 aa5.22□□□□□ -1.57
VPS13A-212ENST00000493341 FAM90A16PA6NEW6 464 aa5.22□□□□□ -1.57
VPS13A-212ENST00000493341 FAM90A9PA6NNJ1 464 aa5.22□□□□□ -1.57
VPS13A-212ENST00000493341 KIAA1324LA8MWY0 1029 aaPredicted RBP5.22□□□□□ -1.57
VPS13A-212ENST00000493341 FAM90A5PA8MXJ8 464 aa5.22□□□□□ -1.57
VPS13A-212ENST00000493341 B4DLN1 442 aa5.22□□□□□ -1.57
VPS13A-212ENST00000493341 TAF5LO75529 589 aa5.22□□□□□ -1.57
VPS13A-212ENST00000493341 PRSS23O95084 383 aa5.22□□□□□ -1.57
VPS13A-212ENST00000493341 GDF11O95390 407 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 142.7 ms