RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 CHIC1Q5VXU3 224 aa16.21■□□□□ 0.18
VPS13A-212ENST00000493341 AEBP2Q6ZN18 517 aaPredicted RBP15.92■□□□□ 0.14
VPS13A-212ENST00000493341 PHF23Q9BUL5 403 aaPredicted RBP14.37□□□□□ -0.11
VPS13A-212ENST00000493341 PLPPR3Q6T4P5 718 aa13.5□□□□□ -0.25
VPS13A-212ENST00000493341 SENP3Q9H4L4 574 aaPredicted RBP13.37□□□□□ -0.27
VPS13A-212ENST00000493341 ADRA2BP18089 450 aa12.68□□□□□ -0.38
VPS13A-212ENST00000493341 EHMT2Q96KQ7 1210 aa12.64□□□□□ -0.39
VPS13A-212ENST00000493341 KCNA4P22459 653 aa12.57□□□□□ -0.4
VPS13A-212ENST00000493341 PPP6R1Q9UPN7 881 aa12.48□□□□□ -0.41
VPS13A-212ENST00000493341 FOXD1Q16676 465 aa12.35□□□□□ -0.43
VPS13A-212ENST00000493341 CSRNP3Q8WYN3 585 aa12.09□□□□□ -0.47
VPS13A-212ENST00000493341 SLC4A1APQ9BWU0 796 aaKnown RBP12.08□□□□□ -0.48
VPS13A-212ENST00000493341 PPP4R3CPQ6ZMV5 832 aa11.99□□□□□ -0.49
VPS13A-212ENST00000493341 NCBP3Q53F19 620 aaKnown RBP11.87□□□□□ -0.51
VPS13A-212ENST00000493341 PIAS4Q8N2W9 510 aaPredicted RBP11.85□□□□□ -0.51
VPS13A-212ENST00000493341 NPM3O75607 178 aaKnown RBP11.72□□□□□ -0.53
VPS13A-212ENST00000493341 ZBTB22O15209 634 aa11.56□□□□□ -0.56
VPS13A-212ENST00000493341 MSH5O43196 834 aa11.55□□□□□ -0.56
VPS13A-212ENST00000493341 CNKSR2Q8WXI2 1034 aa11.48□□□□□ -0.57
VPS13A-212ENST00000493341 SCAF1Q9H7N4 1312 aaKnown RBP11.4□□□□□ -0.59
VPS13A-212ENST00000493341 POTEDQ86YR6 584 aa11.34□□□□□ -0.59
VPS13A-212ENST00000493341 FOXD4L1Q9NU39 408 aa11.31□□□□□ -0.6
VPS13A-212ENST00000493341 SLC24A1O60721 1099 aa11.28□□□□□ -0.6
VPS13A-212ENST00000493341 RTN4Q9NQC3 1192 aaKnown RBP11.21□□□□□ -0.61
VPS13A-212ENST00000493341 MAPK8IP2Q13387 824 aaPredicted RBP11.16□□□□□ -0.62
VPS13A-212ENST00000493341 AMER1Q5JTC6 1135 aaPredicted RBP11.15□□□□□ -0.62
VPS13A-212ENST00000493341 DNAJC5BQ9UF47 199 aa11.13□□□□□ -0.63
VPS13A-212ENST00000493341 RNF216Q9NWF9 866 aaPredicted RBP11.07□□□□□ -0.64
VPS13A-212ENST00000493341 FKBP8Q14318 412 aa10.91□□□□□ -0.66
VPS13A-212ENST00000493341 SLC4A2P04920 1241 aa10.89□□□□□ -0.67
VPS13A-212ENST00000493341 HOXD11P31277 338 aaPredicted RBP10.82□□□□□ -0.68
VPS13A-212ENST00000493341 ATXN8OSP0DMR3 200 aa10.8□□□□□ -0.68
VPS13A-212ENST00000493341 MYCNP04198 464 aaPredicted RBP10.79□□□□□ -0.68
VPS13A-212ENST00000493341 DMRT2Q9Y5R5 561 aa10.77□□□□□ -0.69
VPS13A-212ENST00000493341 ATF5Q9Y2D1 282 aaPredicted RBP10.5□□□□□ -0.73
VPS13A-212ENST00000493341 DCAF8L1A6NGE4 600 aa10.4□□□□□ -0.74
VPS13A-212ENST00000493341 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.39□□□□□ -0.754e-6■■□□□ 11.8
VPS13A-212ENST00000493341 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.36□□□□□ -0.75
VPS13A-212ENST00000493341 HNRNPUL2Q1KMD3 747 aaKnown RBP10.36□□□□□ -0.75
VPS13A-212ENST00000493341 SAMD1Q6SPF0 538 aaPredicted RBP10.36□□□□□ -0.75
VPS13A-212ENST00000493341 PLCB2Q00722 1185 aa10.29□□□□□ -0.76
VPS13A-212ENST00000493341 FBXO3Q9UK99 471 aa10.28□□□□□ -0.76
VPS13A-212ENST00000493341 U3KPZ7 1027 aaPredicted RBP10.27□□□□□ -0.77
VPS13A-212ENST00000493341 ZNF219Q9P2Y4 722 aaPredicted RBP10.22□□□□□ -0.77
VPS13A-212ENST00000493341 SPDYE4A6NLX3 237 aa10.19□□□□□ -0.78
VPS13A-212ENST00000493341 DCAF8L2P0C7V8 631 aa10.19□□□□□ -0.78
VPS13A-212ENST00000493341 HAP1P54257 671 aaPredicted RBP10.19□□□□□ -0.78
VPS13A-212ENST00000493341 VASPP50552 380 aaPredicted RBP10.13□□□□□ -0.79
VPS13A-212ENST00000493341 BCANQ96GW7 911 aa10.07□□□□□ -0.8
VPS13A-212ENST00000493341 IFNLR1Q8IU57 520 aaPredicted RBP10.07□□□□□ -0.8
VPS13A-212ENST00000493341 APLP2Q06481 763 aa10.05□□□□□ -0.8
VPS13A-212ENST00000493341 MKRN4PQ13434 485 aaPredicted RBP10.05□□□□□ -0.8
VPS13A-212ENST00000493341 PRKCSHP14314 528 aaPredicted RBP10.04□□□□□ -0.8
VPS13A-212ENST00000493341 PROM2Q8N271 834 aa10.04□□□□□ -0.8
VPS13A-212ENST00000493341 PKD2Q13563 968 aa9.99□□□□□ -0.81
VPS13A-212ENST00000493341 FBLN2P98095 1184 aa9.98□□□□□ -0.81
VPS13A-212ENST00000493341 VSIG10Q8N0Z9 540 aa9.98□□□□□ -0.81
VPS13A-212ENST00000493341 TAOK2Q9UL54 1235 aa9.97□□□□□ -0.81
VPS13A-212ENST00000493341 TRHP20396 242 aaPredicted RBP9.89□□□□□ -0.83
VPS13A-212ENST00000493341 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.89□□□□□ -0.83
VPS13A-212ENST00000493341 POLA2Q14181 598 aa9.88□□□□□ -0.83
VPS13A-212ENST00000493341 CACNB1Q02641 598 aaPredicted RBP9.87□□□□□ -0.83
VPS13A-212ENST00000493341 KLHL34Q8N239 644 aa9.85□□□□□ -0.83
VPS13A-212ENST00000493341 RNF39Q9H2S5 420 aa9.85□□□□□ -0.83
VPS13A-212ENST00000493341 KDM2AQ9Y2K7 1162 aa9.85□□□□□ -0.83
VPS13A-212ENST00000493341 PAXIP1Q6ZW49 1069 aaPredicted RBP9.84□□□□□ -0.83
VPS13A-212ENST00000493341 BBXQ8WY36 941 aaPredicted RBP9.84□□□□□ -0.83
VPS13A-212ENST00000493341 TPRNQ4KMQ1 711 aa9.83□□□□□ -0.84
VPS13A-212ENST00000493341 CFAP44Q96MT7 982 aa9.83□□□□□ -0.84
VPS13A-212ENST00000493341 ECM2O94769 699 aaPredicted RBP9.82□□□□□ -0.84
VPS13A-212ENST00000493341 SPINK5Q9NQ38 1064 aaPredicted RBP9.82□□□□□ -0.84
VPS13A-212ENST00000493341 NPM1P06748 294 aaKnown RBP eCLIP9.8□□□□□ -0.84
VPS13A-212ENST00000493341 SPOCK2Q92563 424 aa9.8□□□□□ -0.84
VPS13A-212ENST00000493341 CAPN15O75808 1086 aa9.75□□□□□ -0.85
VPS13A-212ENST00000493341 C1QBPQ07021 282 aaKnown RBP9.72□□□□□ -0.85
VPS13A-212ENST00000493341 RGL2O15211 777 aa9.71□□□□□ -0.86
VPS13A-212ENST00000493341 SPRYD3Q8NCJ5 442 aa9.71□□□□□ -0.86
VPS13A-212ENST00000493341 PLCD3Q8N3E9 789 aa9.69□□□□□ -0.86
VPS13A-212ENST00000493341 TSHZ2Q9NRE2 1034 aa9.68□□□□□ -0.86
VPS13A-212ENST00000493341 ZBTB12Q9Y330 459 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-212ENST00000493341 STAG3Q9UJ98 1225 aa9.65□□□□□ -0.86
VPS13A-212ENST00000493341 ABCB7O75027 752 aa9.64□□□□□ -0.87
VPS13A-212ENST00000493341 ZNF692Q9BU19 519 aaPredicted RBP9.63□□□□□ -0.87
VPS13A-212ENST00000493341 CHGAP10645 457 aaKnown RBP9.62□□□□□ -0.87
VPS13A-212ENST00000493341 MIER1Q8N108 512 aa9.62□□□□□ -0.87
VPS13A-212ENST00000493341 CIZ1Q9ULV3 898 aaPredicted RBP9.6□□□□□ -0.87
VPS13A-212ENST00000493341 NBR1Q14596 966 aa9.56□□□□□ -0.88
VPS13A-212ENST00000493341 PABPN1Q86U42 306 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS13A-212ENST00000493341 OSCARQ8IYS5 282 aa9.5□□□□□ -0.89
VPS13A-212ENST00000493341 SPDYE2BA6NHP3 402 aa9.49□□□□□ -0.89
VPS13A-212ENST00000493341 SPDYE6P0CI01 402 aa9.49□□□□□ -0.89
VPS13A-212ENST00000493341 SPDYE2Q495Y8 402 aa9.49□□□□□ -0.89
VPS13A-212ENST00000493341 PLEKHG5O94827 1062 aa9.49□□□□□ -0.89
VPS13A-212ENST00000493341 SSUH2Q9Y2M2 353 aa9.48□□□□□ -0.89
VPS13A-212ENST00000493341 ZBTB47Q9UFB7 747 aaPredicted RBP9.47□□□□□ -0.89
VPS13A-212ENST00000493341 DNAJC5Q9H3Z4 198 aa9.44□□□□□ -0.9
VPS13A-212ENST00000493341 HS6ST3Q8IZP7 471 aa9.44□□□□□ -0.9
VPS13A-212ENST00000493341 TRIM41Q8WV44 630 aa9.41□□□□□ -0.9
VPS13A-212ENST00000493341 TULP1O00294 542 aaPredicted RBP9.39□□□□□ -0.91
VPS13A-212ENST00000493341 TIMELESSQ9UNS1 1208 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms