RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 KRT26Q7Z3Y9 468 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 CPA6Q8N4T0 437 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 OSR1Q8TAX0 266 aaPredicted RBP4.3□□□□□ -1.72
SMC4-220ENST00000488017 TNPO1Q92973 898 aaKnown RBP4.3□□□□□ -1.72
SMC4-220ENST00000488017 FAXDC2Q96IV6 333 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 MOGAT1Q96PD6 335 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 PUS7LQ9H0K6 701 aaKnown RBP4.3□□□□□ -1.72
SMC4-220ENST00000488017 FAM234AQ9H0X4 552 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 MRPL46Q9H2W6 279 aaKnown RBP4.3□□□□□ -1.72
SMC4-220ENST00000488017 HEY2Q9UBP5 337 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 NDRG4Q9ULP0 352 aaKnown RBP4.3□□□□□ -1.72
SMC4-220ENST00000488017 HS3ST3B1Q9Y662 390 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 OBSCNQ5VST9 7968 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 SLC16A6O15403 523 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 GCATO75600 419 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 THBS4P35443 961 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 CDKN2AP42771 156 aaKnown RBP4.29□□□□□ -1.72
SMC4-220ENST00000488017 LILRA4P59901 499 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 KRT85P78386 507 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 DAB2IPQ5VWQ8 1189 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 ANO7Q6IWH7 933 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 BCDIN3DQ7Z5W3 292 aaKnown RBP4.29□□□□□ -1.72
SMC4-220ENST00000488017 SLC15A3Q8IY34 581 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 CBARPQ8N350 705 aaPredicted RBP4.29□□□□□ -1.72
SMC4-220ENST00000488017 CNTD1Q8N815 330 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 PNISRQ8TF01 805 aaKnown RBP4.29□□□□□ -1.72
SMC4-220ENST00000488017 ZFYVE19Q96K21 471 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 CCDC17Q96LX7 622 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 TXLNGQ9NUQ3 528 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 TBX22Q9Y458 520 aa4.29□□□□□ -1.72
SMC4-220ENST00000488017 LRRC14BA6NHZ5 514 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 PCDHGA12O60330 932 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 VIL1P09327 827 aaKnown RBP4.28□□□□□ -1.72
SMC4-220ENST00000488017 PHKG2P15735 406 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 FPR3P25089 353 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 PDE6CP51160 858 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 RHDQ02161 417 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 UAP1L1Q3KQV9 507 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 AMOTQ4VCS5 1084 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 SFTPA1Q8IWL2 248 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 ATL2Q8NHH9 583 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 MPLKIPQ8TAP9 179 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 MAP4K1Q92918 833 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 TEKT5Q96M29 485 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 DPCDQ9BVM2 203 aaPredicted RBP4.28□□□□□ -1.72
SMC4-220ENST00000488017 ASIC5Q9NY37 505 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 FEZ2Q9UHY8 353 aaPredicted RBP4.28□□□□□ -1.72
SMC4-220ENST00000488017 PCDHGA9Q9Y5G4 932 aaKnown RBP4.28□□□□□ -1.72
SMC4-220ENST00000488017 PCDHGA8Q9Y5G5 932 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 PCDHGA7Q9Y5G6 932 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 PCDHGA6Q9Y5G7 932 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 PCDHGA3Q9Y5H0 932 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 PCDHA3Q9Y5H8 950 aa4.28□□□□□ -1.72
SMC4-220ENST00000488017 IARSP41252 1262 aaKnown RBP4.27□□□□□ -1.73
SMC4-220ENST00000488017 ADKP55263 362 aaKnown RBP4.27□□□□□ -1.73
SMC4-220ENST00000488017 NOGQ13253 232 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 TMEM63BQ5T3F8 832 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 COLCA1Q6ZS62 124 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 ANKRD13BQ86YJ7 626 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 DCP1BQ8IZD4 617 aaKnown RBP4.27□□□□□ -1.73
SMC4-220ENST00000488017 ZNF548Q8NEK5 533 aaPredicted RBP4.27□□□□□ -1.73
SMC4-220ENST00000488017 OSCP1Q8WVF1 389 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 MMS19Q96T76 1030 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 SLCO5A1Q9H2Y9 848 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 TMEM184CQ9NVA4 438 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 SERPINB13Q9UIV8 391 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 SHOC2Q9UQ13 582 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 MRFAP1Q9Y605 127 aa4.27□□□□□ -1.73
SMC4-220ENST00000488017 C4orf47A7E2U8 309 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 XPOTO43592 962 aaKnown RBP4.26□□□□□ -1.73
SMC4-220ENST00000488017 CYP19A1P11511 503 aaPredicted RBP4.26□□□□□ -1.73
SMC4-220ENST00000488017 CNGA1P29973 690 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 LRPAP1P30533 357 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 VIPR2P41587 438 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 HK3P52790 923 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 RPS13P62277 151 aaKnown RBP4.26□□□□□ -1.73
SMC4-220ENST00000488017 E2F1Q01094 437 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 SATB1Q01826 763 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 CFHR1Q03591 330 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 CYP1B1Q16678 543 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 ZNF549Q6P9A3 640 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 HEATR3Q7Z4Q2 680 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 NOP9Q86U38 636 aaKnown RBP4.26□□□□□ -1.73
SMC4-220ENST00000488017 LIX1LQ8IVB5 337 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.26□□□□□ -1.73
SMC4-220ENST00000488017 RSPRY1Q96DX4 576 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 FAM167AQ96KS9 214 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 MDFICQ9P1T7 246 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 ABCF2Q9UG63 623 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 AMFRQ9UKV5 643 aa4.26□□□□□ -1.73
SMC4-220ENST00000488017 AP4M1O00189 453 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 MT-CO1P00395 513 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 MT-CO3P00414 261 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 FGAP02671 866 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 CSF1RP07333 972 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 CTSAP10619 480 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 EMC10Q5UCC4 262 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 CAND1Q86VP6 1230 aaKnown RBP4.25□□□□□ -1.73
SMC4-220ENST00000488017 PPP1R3BQ86XI6 285 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 PELI3Q8N2H9 469 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms