RNA–Protein interactions for RNA: ENST00000440127.1

HMGB3P11-201, Transcript of high mobility group box 3 pseudogene 11, humanhuman

BASIC

Gene HMGB3P11, Length 604 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P11-201ENST00000440127 SCOCQ9UIL1 159 aa3.98□□□□□ -1.77
HMGB3P11-201ENST00000440127 PNMA8BQ9ULN7 279 aaPredicted RBP3.98□□□□□ -1.77
HMGB3P11-201ENST00000440127 MTO1Q9Y2Z2 717 aaKnown RBP3.98□□□□□ -1.77
HMGB3P11-201ENST00000440127 SNX14Q9Y5W7 946 aa3.98□□□□□ -1.77
HMGB3P11-201ENST00000440127 GPR45Q9Y5Y3 372 aa3.98□□□□□ -1.77
HMGB3P11-201ENST00000440127 DDX49Q9Y6V7 483 aaKnown RBP3.98□□□□□ -1.77
HMGB3P11-201ENST00000440127 COL15A1P39059 1388 aa3.98□□□□□ -1.77
HMGB3P11-201ENST00000440127 CACNA1FO60840 1977 aa3.98□□□□□ -1.77
HMGB3P11-201ENST00000440127 MRC1P22897 1456 aa3.98□□□□□ -1.77
HMGB3P11-201ENST00000440127 STRCP1A6NGW2 1772 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 SIPA1L3O60292 1781 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 UNC119BA6NIH7 251 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 TRIM75PA6NK02 468 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 ZNF185O15231 689 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PCDHGA12O60330 932 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 ERN1O75460 977 aaKnown RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 SNUPNO95149 360 aaKnown RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 SPDEFO95238 335 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 GPANK1O95872 356 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PF4V1P10720 104 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 ZKSCAN1P17029 563 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 LPOP22079 712 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 GCSHP23434 173 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 ZFP36P26651 326 aaKnown RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PSMA5P28066 241 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 RECQLP46063 649 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 KCNJ4P48050 445 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PIP4K2AP48426 406 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 SEC24CP53992 1094 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 MRPS21P82921 87 aaKnown RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 SRSF2Q01130 221 aaKnown RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 COL10A1Q03692 680 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 TFCP2Q12800 502 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 GALEQ14376 348 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 GBX1Q14549 363 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 ODF1Q14990 250 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 NECTIN1Q15223 517 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 VPS53Q5VIR6 699 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PPP4R4Q6NUP7 873 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 ZNF529Q6P280 563 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 UBE3BQ7Z3V4 1068 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 FITM2Q8N6M3 262 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 AOPEPQ8N6M6 819 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 CCDC191Q8NCU4 936 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 KLHDC4Q8TBB5 520 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 MAP4K1Q92918 833 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 TTC14Q96N46 770 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PNKPQ96T60 521 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 FSD1Q9BTV5 496 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 DUSP26Q9BV47 211 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 UPF3BQ9BZI7 483 aaKnown RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 BOLA2Q9H3K6 86 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 GRPEL1Q9HAV7 217 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 GPR108Q9NPR9 543 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 ANLNQ9NQW6 1124 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PDRG1Q9NUG6 133 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 LMBRD1Q9NUN5 540 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 SYBUQ9NX95 663 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 CWC25Q9NXE8 425 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 TMOD3Q9NYL9 352 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 AJAP1Q9UKB5 411 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 LIMCH1Q9UPQ0 1083 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 ANKRD6Q9Y2G4 727 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 NEU2Q9Y3R4 380 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PCDHGA9Q9Y5G4 932 aaKnown RBP3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PCDHGA8Q9Y5G5 932 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PCDHGA7Q9Y5G6 932 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PCDHGA6Q9Y5G7 932 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PCDHGA3Q9Y5H0 932 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 PCDHGA2Q9Y5H1 932 aa3.97□□□□□ -1.77
HMGB3P11-201ENST00000440127 MAST3O60307 1309 aa3.96□□□□□ -1.77
HMGB3P11-201ENST00000440127 CCDC171Q6TFL3 1326 aa3.96□□□□□ -1.77
HMGB3P11-201ENST00000440127 ZNF335Q9H4Z2 1342 aaPredicted RBP3.96□□□□□ -1.77
HMGB3P11-201ENST00000440127 IFRD1O00458 451 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 ZRANB2O95218 330 aaKnown RBP eCLIP3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 MBD3O95983 291 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 C1RP00736 705 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 A1BGP04217 495 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 EGR2P11161 476 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 IL15P40933 162 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 AK2P54819 239 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 CXADRP78310 365 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 TP53BP2Q13625 1128 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 PKP1Q13835 747 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 UBXN2BQ14CS0 331 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 BRD3Q15059 726 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 MINDY4Q4G0A6 757 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 PPP4R3AQ6IN85 833 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 TMED8Q6PL24 325 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 Q6ZVL8 140 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 RUFY3Q7L099 469 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 TICAM2Q86XR7 235 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 TMEM132CQ8N3T6 1108 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 REPS2Q8NFH8 660 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 SLC35B2Q8TB61 432 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 NUP133Q8WUM0 1156 aa3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 ZNF764Q96H86 408 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P11-201ENST00000440127 FAXDC2Q96IV6 333 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms