RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS41YDR080W CTR3Q06686 241 aa1.56□□□□□ -2.16
VPS41YDR080W UTP11P34247 250 aaPredicted RBP1.55□□□□□ -2.16
VPS41YDR080W CIN5P40917 295 aa1.55□□□□□ -2.16
VPS41YDR080W MRPS17Q03246 237 aaPredicted RBP1.55□□□□□ -2.16
VPS41YDR080W AVO2Q04749 426 aa1.55□□□□□ -2.16
VPS41YDR080W IPI1P38803 334 aaPredicted RBP1.55□□□□□ -2.16
VPS41YDR080W RPC10P40422 70 aa1.55□□□□□ -2.16
VPS41YDR080W ARC15P40518 154 aaRIP-Chip data1.55□□□□□ -2.16not detected
VPS41YDR080W FCF1Q05498 189 aaPredicted RBP1.55□□□□□ -2.16
VPS41YDR080W IES3Q12345 250 aa1.55□□□□□ -2.16
VPS41YDR080W MRPS9P38120 278 aa1.54□□□□□ -2.16
VPS41YDR080W YAR029WP39549 74 aa1.54□□□□□ -2.16
VPS41YDR080W MOG1P47123 218 aa1.54□□□□□ -2.16
VPS41YDR080W OST3P48439 350 aa1.54□□□□□ -2.16
VPS41YDR080W YBR292CP38357 123 aa1.54□□□□□ -2.16
VPS41YDR080W HAC1P41546 238 aa1.54□□□□□ -2.16
VPS41YDR080W SRB7P47822 140 aa1.54□□□□□ -2.16
VPS41YDR080W PNC1P53184 216 aaKnown RBP1.54□□□□□ -2.16
VPS41YDR080W YGR026WP53217 278 aa1.54□□□□□ -2.16
VPS41YDR080W TIM22Q12328 207 aa1.54□□□□□ -2.16
VPS41YDR080W YLR146W-AQ2V2P1 62 aa1.54□□□□□ -2.16
VPS41YDR080W YBR242WP38331 238 aa1.53□□□□□ -2.16
VPS41YDR080W DAD1Q12248 94 aa1.53□□□□□ -2.16
VPS41YDR080W YGL041C-BQ3E750 60 aa1.53□□□□□ -2.16
VPS41YDR080W ECM12O13529 151 aa1.53□□□□□ -2.16
VPS41YDR080W DDR48P18899 430 aaKnown RBP1.53□□□□□ -2.16
VPS41YDR080W SPO13P23624 291 aa1.53□□□□□ -2.16
VPS41YDR080W SMD3P43321 101 aaKnown RBP1.53□□□□□ -2.16
VPS41YDR080W ATP19P81451 68 aa1.53□□□□□ -2.16
VPS41YDR080W GCN3P14741 305 aa1.53□□□□□ -2.17
VPS41YDR080W IGD1P43598 195 aa1.53□□□□□ -2.17
VPS41YDR080W POF1P25576 258 aa1.52□□□□□ -2.17
VPS41YDR080W CYB5P40312 120 aa1.52□□□□□ -2.17
VPS41YDR080W YNR066CP53752 436 aa1.52□□□□□ -2.17
VPS41YDR080W DAD4P69851 72 aa1.52□□□□□ -2.17
VPS41YDR080W RRT7Q07829 113 aa1.52□□□□□ -2.17
VPS41YDR080W RPS22AP0C0W1 130 aaKnown RBP1.52□□□□□ -2.17
VPS41YDR080W YBL081WP38180 368 aaKnown RBP1.52□□□□□ -2.17
VPS41YDR080W YCL001W-AP87012 153 aa1.52□□□□□ -2.17
VPS41YDR080W RAV2Q03956 351 aa1.52□□□□□ -2.17
VPS41YDR080W YMR175W-AQ3E766 64 aa1.52□□□□□ -2.17
VPS41YDR080W SMP1P38128 452 aa1.51□□□□□ -2.17
VPS41YDR080W YER076CP40049 302 aa1.51□□□□□ -2.17
VPS41YDR080W YMR141CP40211 102 aa1.51□□□□□ -2.17
VPS41YDR080W SNA2P56508 79 aa1.51□□□□□ -2.17
VPS41YDR080W DID2P69771 204 aa1.51□□□□□ -2.17
VPS41YDR080W YDL241WQ07738 123 aa1.51□□□□□ -2.17
VPS41YDR080W ENV10Q99382 181 aa1.51□□□□□ -2.17
VPS41YDR080W PEX22P39718 180 aa1.51□□□□□ -2.17
VPS41YDR080W YFL019CP43576 117 aa1.51□□□□□ -2.17
VPS41YDR080W SDS23P53172 527 aa1.51□□□□□ -2.17
VPS41YDR080W RPF1P38805 295 aaKnown RBP1.5□□□□□ -2.17
VPS41YDR080W YOR105WQ08504 108 aa1.5□□□□□ -2.17
VPS41YDR080W YOP1Q12402 180 aa1.5□□□□□ -2.17
VPS41YDR080W SEC72P39742 193 aaKnown RBP1.5□□□□□ -2.17
VPS41YDR080W VTC1P40046 129 aaRIP-Chip data1.5□□□□□ -2.17not detected
VPS41YDR080W DAN1P47178 298 aa1.5□□□□□ -2.17
VPS41YDR080W GPI19Q04082 140 aa1.5□□□□□ -2.17
VPS41YDR080W MRPL31P14063 131 aaPredicted RBP1.5□□□□□ -2.17
VPS41YDR080W PGD1P40356 397 aa1.5□□□□□ -2.17
VPS41YDR080W LOC1P43586 204 aaPredicted RBP1.5□□□□□ -2.17
VPS41YDR080W YFR045WP43617 309 aa1.5□□□□□ -2.17
VPS41YDR080W YLR118CQ12354 227 aa1.5□□□□□ -2.17
VPS41YDR080W TAL1P15019 335 aaKnown RBP1.49□□□□□ -2.17
VPS41YDR080W SRP21P32342 167 aa1.49□□□□□ -2.17
VPS41YDR080W YHR140WP38842 239 aa1.49□□□□□ -2.17
VPS41YDR080W YAL064WP39711 94 aa1.49□□□□□ -2.17
VPS41YDR080W SPC25P40014 221 aa1.49□□□□□ -2.17
VPS41YDR080W YKE4P40544 346 aa1.49□□□□□ -2.17
VPS41YDR080W FCF2Q12035 217 aaPredicted RBP1.49□□□□□ -2.17
VPS41YDR080W SHG1P38337 142 aa1.48□□□□□ -2.17
VPS41YDR080W NAT3Q06504 195 aa1.48□□□□□ -2.17
VPS41YDR080W RPL27AP0C2H6 136 aaKnown RBP1.48□□□□□ -2.17
VPS41YDR080W SAR1P20606 190 aaKnown RBP1.48□□□□□ -2.17
VPS41YDR080W YIL163CP40448 117 aa1.48□□□□□ -2.17
VPS41YDR080W SNU23Q12368 194 aaPredicted RBP1.48□□□□□ -2.17
VPS41YDR080W STF1P01098 86 aa1.47□□□□□ -2.17
VPS41YDR080W POG1P40473 351 aa1.47□□□□□ -2.17
VPS41YDR080W DCV1P43595 202 aa1.47□□□□□ -2.17
VPS41YDR080W PAU4P53427 120 aa1.47□□□□□ -2.17
VPS41YDR080W YLR156WP0CE96 114 aa1.47□□□□□ -2.17
VPS41YDR080W YLR159WP0CE97 114 aa1.47□□□□□ -2.17
VPS41YDR080W YLR161WP0CE98 114 aa1.47□□□□□ -2.17
VPS41YDR080W UBI4P0CG63 381 aaKnown RBP1.47□□□□□ -2.17
VPS41YDR080W ARC18Q05933 178 aaKnown RBP1.47□□□□□ -2.17
VPS41YDR080W DXO1Q06349 442 aa1.47□□□□□ -2.17
VPS41YDR080W YER039C-AP0CD97 72 aa1.47□□□□□ -2.17
VPS41YDR080W SPG1P50088 95 aa1.47□□□□□ -2.17
VPS41YDR080W YGL149WP53116 101 aa1.47□□□□□ -2.17
VPS41YDR080W ACB1P31787 87 aa1.46□□□□□ -2.18
VPS41YDR080W RPL37BP51402 88 aaKnown RBP1.46□□□□□ -2.18
VPS41YDR080W TVP18Q04767 167 aa1.46□□□□□ -2.18
VPS41YDR080W ANT1Q06497 328 aa1.46□□□□□ -2.18
VPS41YDR080W ATP16Q12165 160 aa1.46□□□□□ -2.18
VPS41YDR080W CKS1P20486 150 aaKnown RBP1.46□□□□□ -2.18
VPS41YDR080W MSK1P32048 576 aa1.46□□□□□ -2.18
VPS41YDR080W YJR146WP47174 117 aa1.46□□□□□ -2.18
VPS41YDR080W GIM5Q04493 163 aa1.46□□□□□ -2.18
VPS41YDR080W COX19Q3E731 98 aa1.46□□□□□ -2.18
VPS41YDR080W PAU1P0CE88 120 aa1.45□□□□□ -2.18
Retrieved 100 of 5,963 RNA–protein pairs in 23.3 ms