RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ACAT1P24752 427 aaKnown RBP16.98■□□□□ 0.31
CUX1-213ENST00000549414 PTGER2P43116 358 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 ATN1P54259 1190 aaPredicted RBP16.98■□□□□ 0.31
CUX1-213ENST00000549414 ALDH18A1P54886 795 aaKnown RBP16.98■□□□□ 0.31
CUX1-213ENST00000549414 CORO7P57737 925 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 FASTKD1Q53R41 847 aaKnown RBP16.98■□□□□ 0.31
CUX1-213ENST00000549414 ZPBP2Q6X784 338 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 PLEKHH3Q7Z736 793 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 GRAMD1AQ96CP6 724 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 PABPC5Q96DU9 382 aaKnown RBP16.98■□□□□ 0.31
CUX1-213ENST00000549414 SP110Q9HB58 689 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 ANGPTL3Q9Y5C1 460 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 KPNA2P52292 529 aaKnown RBP16.98■□□□□ 0.31
CUX1-213ENST00000549414 PRAMEP78395 509 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 CDC42EP1Q00587 391 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 CAPSQ13938 189 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 HABP4Q5JVS0 413 aaKnown RBP16.98■□□□□ 0.31
CUX1-213ENST00000549414 GLT1D1Q96MS3 346 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 TRIM56Q9BRZ2 755 aaKnown RBP16.98■□□□□ 0.31
CUX1-213ENST00000549414 CEP41Q9BYV8 373 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 MRPL42Q9Y6G3 142 aaKnown RBP16.98■□□□□ 0.31
CUX1-213ENST00000549414 SCN11AQ9UI33 1791 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 EPHB2P29323 1055 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 KLC3Q6P597 504 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 KREMEN1Q96MU8 473 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 FAM111AQ96PZ2 611 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 TTC1Q99614 292 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 FAM200BP0CF97 657 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 SLC26A2P50443 739 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 PCSK7Q16549 785 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 GRAMD1BQ3KR37 738 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 SCUBE3Q8IX30 993 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 FBXO41Q8TF61 875 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 BSNDQ8WZ55 320 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 CNPY3Q9BT09 278 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 FAM167BQ9BTA0 163 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 SARS2Q9NP81 518 aaKnown RBP16.98■□□□□ 0.31
CUX1-213ENST00000549414 HES2Q9Y543 173 aa16.98■□□□□ 0.31
CUX1-213ENST00000549414 GOLGA4Q13439 2230 aaKnown RBP16.97■□□□□ 0.31
CUX1-213ENST00000549414 COL14A1Q05707 1796 aaKnown RBP16.97■□□□□ 0.31
CUX1-213ENST00000549414 NKRFO15226 690 aaKnown RBP eCLIP16.97■□□□□ 0.312e-6■■□□□ 12.1
CUX1-213ENST00000549414 RIPK2O43353 540 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 PAMP19021 973 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 GTF2A2P52657 109 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 MARSP56192 900 aaKnown RBP16.97■□□□□ 0.31
CUX1-213ENST00000549414 PRELID2Q8N945 189 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 DNAJB3Q8WWF6 145 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 IFT43Q96FT9 208 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 ZNF518BQ9C0D4 1074 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 PPP2R3BQ9Y5P8 575 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 GEMIN4P57678 1058 aaKnown RBP16.97■□□□□ 0.31
CUX1-213ENST00000549414 GRIK4Q16099 956 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 TREML2Q5T2D2 321 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 C1orf146Q5VVC0 180 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 ARMC2Q8NEN0 867 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 URGCPQ8TCY9 931 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 L3MBTL3Q96JM7 780 aaPredicted RBP16.97■□□□□ 0.31
CUX1-213ENST00000549414 APOL2Q9BQE5 337 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 PIH1D1Q9NWS0 290 aaKnown RBP16.97■□□□□ 0.31
CUX1-213ENST00000549414 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.97■□□□□ 0.31
CUX1-213ENST00000549414 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.97■□□□□ 0.313e-6■■■■□ 19.4
CUX1-213ENST00000549414 KPNA7A9QM74 516 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 KBTBD13C9JR72 458 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 B4GALT5O43286 388 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 LSM8O95777 96 aaKnown RBP16.97■□□□□ 0.31
CUX1-213ENST00000549414 ENO1P06733 434 aaKnown RBP16.97■□□□□ 0.31
CUX1-213ENST00000549414 DENND5BQ6ZUT9 1274 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 ZNF669Q96BR6 464 aaPredicted RBP16.97■□□□□ 0.31
CUX1-213ENST00000549414 PWWP2AQ96N64 755 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 PCDHB18PQ96TA0 734 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 KATNAL1Q9BW62 490 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 VPS33BQ9H267 617 aa16.97■□□□□ 0.31
CUX1-213ENST00000549414 CXCL11O14625 94 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 AP1G2O75843 785 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 APOEP02649 317 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 PECAM1P16284 738 aaPredicted RBP16.96■□□□□ 0.31
CUX1-213ENST00000549414 AARSP49588 968 aaKnown RBP eCLIP16.96■□□□□ 0.313e-6■■■■■ 61.8
CUX1-213ENST00000549414 EFHC1Q5JVL4 640 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 ZNF662Q6ZS27 426 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 USH1CQ9Y6N9 552 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 SPEF2Q9C093 1822 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 SNRPAP09012 282 aaKnown RBP16.96■□□□□ 0.31
CUX1-213ENST00000549414 STIP1P31948 543 aaKnown RBP16.96■□□□□ 0.31
CUX1-213ENST00000549414 RPL7AP62424 266 aaKnown RBP16.96■□□□□ 0.31
CUX1-213ENST00000549414 NSUN2Q08J23 767 aaKnown RBP eCLIP16.96■□□□□ 0.31
CUX1-213ENST00000549414 RASIP1Q5U651 963 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 DLK2Q6UY11 383 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 NAALADL1Q9UQQ1 740 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 PLIN4Q96Q06 1357 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 NEMP1O14524 444 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 PIAS1O75925 651 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 SHBGP04278 402 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 SSTR1P30872 391 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 CPA2P48052 419 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 EEF1DP3Q658K8 133 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 LRRC6Q86X45 466 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 WRAP73Q9P2S5 460 aaPredicted RBP16.96■□□□□ 0.31
CUX1-213ENST00000549414 C5P01031 1676 aa16.96■□□□□ 0.31
CUX1-213ENST00000549414 UBA6A0AVT1 1052 aaPredicted RBP16.96■□□□□ 0.3
CUX1-213ENST00000549414 C3orf70A6NLC5 250 aaPredicted RBP16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms