RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CNTFP26441 200 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 ACADSBP45954 432 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 TRAF2Q12933 501 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 WDR72Q3MJ13 1102 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 PPP1R14AQ96A00 147 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 RMND5BQ96G75 393 aaPredicted RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 KLF6Q99612 283 aaPredicted RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 C1orf50Q9BV19 199 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 ETAA1Q9NY74 926 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 TMEM253P0C7T8 217 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 PTGER2P43116 358 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 DPYDQ12882 1025 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 WASHC2DQ5SRD0 308 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 ZNF618Q5T7W0 954 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 APBB2Q92870 758 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 VPS33AQ96AX1 596 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 PABPC5Q96DU9 382 aaKnown RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 FHOD1Q9Y613 1164 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 ATP7BP35670 1465 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 SF3B1O75533 1304 aaKnown RBP eCLIP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 HEATR9A2RTY3 570 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 PEX1O43933 1283 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 PCNX4Q63HM2 1172 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 ANKS1AQ92625 1134 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 CYP39A1Q9NYL5 469 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 CPB1P15086 417 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 KCNT1Q5JUK3 1230 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 RNF112Q9ULX5 631 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 TSPAN9O75954 239 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 ALOX15P16050 662 aaPredicted RBP14.37□□□□□ -0.11
CSPG4-201ENST00000308508 KCNMA1Q12791 1236 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 TWF1Q12792 350 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 PRMT9Q6P2P2 845 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 ADGRF4Q8IZF3 695 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 KCNB2Q92953 911 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 WWOXQ9NZC7 414 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 DGKKQ5KSL6 1271 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 CHSY1Q86X52 802 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 VAV3Q9UKW4 847 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 TIMM44O43615 452 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 TGM2P21980 687 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 GUCA1AP43080 201 aaPredicted RBP14.37□□□□□ -0.11
CSPG4-201ENST00000308508 OVGP1Q12889 678 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 MAPK7Q13164 816 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 NCOA4Q13772 614 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 TTLL9Q3SXZ7 439 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 ZFP1Q6P2D0 407 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 DENND6AQ8IWF6 608 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 NOA1Q8NC60 698 aaKnown RBP14.37□□□□□ -0.11
CSPG4-201ENST00000308508 SHCBP1LQ9BZQ2 653 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 COA1Q9GZY4 146 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 TMEM260Q9NX78 707 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 TRIM43BA6NCK2 446 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 PP2D1A8MPX8 630 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 ABCB1P08183 1280 aaPredicted RBP14.37□□□□□ -0.11
CSPG4-201ENST00000308508 FASP25445 335 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 FEN1P39748 380 aaKnown RBP14.37□□□□□ -0.11
CSPG4-201ENST00000308508 CCT8P50990 548 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 CCNJLQ8IV13 435 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 C10orf53Q8N6V4 93 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 TC2NQ8N9U0 490 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 ATG16L2Q8NAA4 619 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 MUC3BQ9H195 1237 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 REREQ9P2R6 1566 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 PSMB9P28065 219 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 RBP5P82980 135 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 GALNTL6Q49A17 601 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 MB21D2Q8IYB1 491 aaPredicted RBP14.37□□□□□ -0.11
CSPG4-201ENST00000308508 IPMKQ8NFU5 416 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 KCTD14Q9BQ13 255 aaPredicted RBP14.37□□□□□ -0.11
CSPG4-201ENST00000308508 PCDHB2Q9Y5E7 798 aa14.37□□□□□ -0.11
CSPG4-201ENST00000308508 SASH1O94885 1247 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 EDRF1Q3B7T1 1238 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 ZNF669Q96BR6 464 aaPredicted RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 PHGDHO43175 533 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 SMNDC1O75940 238 aaKnown RBP eCLIP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 CYP19A1P11511 503 aaPredicted RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 ATAD3BQ5T9A4 648 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 DPF2Q92785 391 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 TMBIM4Q9HC24 238 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 TRMT6Q9UJA5 497 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 CDHR2Q9BYE9 1310 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 TRAPPC3O43617 180 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 RHOBTB3O94955 611 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 CHRM3P20309 590 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 RXRGP48443 463 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 ZNF57Q68EA5 555 aaPredicted RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 ADSSL1Q8N142 457 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 FAM71DQ8N9W8 422 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 MARCH10Q8NA82 808 aaPredicted RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 RORBQ92753 470 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 SLC10A4Q96EP9 437 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 MEI4A8MW99 385 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 ARL4DP49703 201 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 FXR1P51114 621 aaKnown RBP eCLIP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 CYP4A22Q5TCH4 519 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 TYW3Q6IPR3 259 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 HS6ST3Q8IZP7 471 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 MCM8Q9UJA3 840 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 MYRFQ9Y2G1 1151 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms