RNA–Protein interactions for RNA: YPR013C

CMR3, Transcript of Putative zinc finger protein, yeast

Gene CMR3, Length 954 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CMR3	YPR013C	PRE1	P22141	198 aa	Known RBP	2.48	□□□□□ -2.01
CMR3	YPR013C	RUB1	Q03919	77 aa		2.48	□□□□□ -2.01
CMR3	YPR013C	FCF2	Q12035	217 aa	Predicted RBP	2.48	□□□□□ -2.01
CMR3	YPR013C	KTI11	Q3E840	82 aa		2.48	□□□□□ -2.01
CMR3	YPR013C	YGL230C	P53074	147 aa		2.47	□□□□□ -2.01
CMR3	YPR013C	COA3	Q3E7B2	85 aa		2.47	□□□□□ -2.01
CMR3	YPR013C	FPR1	P20081	114 aa	Known RBP	2.46	□□□□□ -2.02
CMR3	YPR013C	YCL042W	P25572	119 aa		2.46	□□□□□ -2.02
CMR3	YPR013C	CDC39	P25655	2108 aa	Known RBP	2.46	□□□□□ -2.02
CMR3	YPR013C	YFL065C	P43539	102 aa		2.46	□□□□□ -2.02
CMR3	YPR013C	ADK1	P07170	222 aa	Known RBP	2.45	□□□□□ -2.02
CMR3	YPR013C	YBR242W	P38331	238 aa		2.45	□□□□□ -2.02
CMR3	YPR013C	DCV1	P43595	202 aa		2.45	□□□□□ -2.02
CMR3	YPR013C	ACC1	Q00955	2233 aa	Known RBP	2.45	□□□□□ -2.02
CMR3	YPR013C	MDS3	P53094	1487 aa		2.45	□□□□□ -2.02
CMR3	YPR013C	KIN28	P06242	306 aa		2.44	□□□□□ -2.02
CMR3	YPR013C	FUN14	P18411	198 aa		2.44	□□□□□ -2.02
CMR3	YPR013C	ANB1	P19211	157 aa		2.44	□□□□□ -2.02
CMR3	YPR013C	HSP10	P38910	106 aa		2.44	□□□□□ -2.02
CMR3	YPR013C	YGL149W	P53116	101 aa		2.44	□□□□□ -2.02
CMR3	YPR013C	BRP1	P53194	125 aa		2.44	□□□□□ -2.02
CMR3	YPR013C	IGO1	P53897	168 aa		2.44	□□□□□ -2.02
CMR3	YPR013C	HYP2	P23301	157 aa	Known RBP	2.43	□□□□□ -2.02
CMR3	YPR013C	BAT2	P47176	376 aa	Known RBP	2.43	□□□□□ -2.02
CMR3	YPR013C	YPL067C	Q02754	198 aa		2.43	□□□□□ -2.02
CMR3	YPR013C	YLR042C	Q07990	161 aa		2.43	□□□□□ -2.02
CMR3	YPR013C	PAU21	P0CE86	164 aa		2.42	□□□□□ -2.02
CMR3	YPR013C	PAU22	P0CE87	164 aa		2.42	□□□□□ -2.02
CMR3	YPR013C	NMT1	P14743	455 aa		2.42	□□□□□ -2.02
CMR3	YPR013C	SEC59	P20048	519 aa		2.42	□□□□□ -2.02
CMR3	YPR013C	ERV14	P53173	138 aa		2.42	□□□□□ -2.02
CMR3	YPR013C	YOR376W-A	Q3E805	51 aa		2.42	□□□□□ -2.02
CMR3	YPR013C	MHF1	Q3E835	90 aa		2.42	□□□□□ -2.02
CMR3	YPR013C	SPP41	P38904	1435 aa		2.42	□□□□□ -2.02
CMR3	YPR013C	VAM10	Q08474	114 aa		2.41	□□□□□ -2.02
CMR3	YPR013C	YOR097C	Q12274	175 aa	Predicted RBP	2.41	□□□□□ -2.02
CMR3	YPR013C	GTT2	Q12390	233 aa		2.41	□□□□□ -2.02
CMR3	YPR013C	UBR2	Q07963	1872 aa		2.41	□□□□□ -2.02
CMR3	YPR013C	HAP3	P13434	144 aa		2.4	□□□□□ -2.03
CMR3	YPR013C	LHP1	P33399	275 aa	Known RBP	2.4	□□□□□ -2.03
CMR3	YPR013C	YKL044W	P36092	106 aa		2.4	□□□□□ -2.03
CMR3	YPR013C	SRL3	P36167	246 aa		2.4	□□□□□ -2.03
CMR3	YPR013C	MRPL15	P36523	253 aa		2.4	□□□□□ -2.03
CMR3	YPR013C	YBR027C	P38220	110 aa		2.4	□□□□□ -2.03
CMR3	YPR013C	RGI1	P40043	161 aa	Predicted RBP	2.4	□□□□□ -2.03
CMR3	YPR013C	YER137C	P40083	148 aa	Known RBP	2.4	□□□□□ -2.03
CMR3	YPR013C	YFL051C	P43552	160 aa		2.4	□□□□□ -2.03
CMR3	YPR013C	FIT1	Q04433	528 aa		2.4	□□□□□ -2.03
CMR3	YPR013C	YCR099C	P25657	155 aa		2.39	□□□□□ -2.03
CMR3	YPR013C	RTR2	Q12378	196 aa		2.39	□□□□□ -2.03
CMR3	YPR013C	YER039C-A	P0CD97	72 aa		2.38	□□□□□ -2.03
CMR3	YPR013C	SNF11	P38956	169 aa		2.38	□□□□□ -2.03
CMR3	YPR013C	YAR029W	P39549	74 aa		2.38	□□□□□ -2.03
CMR3	YPR013C	MRPL11	P36521	249 aa	Predicted RBP	2.37	□□□□□ -2.03
CMR3	YPR013C	ATG8	P38182	117 aa	RIP-Chip data	2.37	□□□□□ -2.03	not detected
CMR3	YPR013C	PAM16	P42949	149 aa		2.37	□□□□□ -2.03
CMR3	YPR013C	YFR035C	P43608	114 aa		2.37	□□□□□ -2.03
CMR3	YPR013C	SED1	Q01589	338 aa		2.37	□□□□□ -2.03
CMR3	YPR013C	GPI19	Q04082	140 aa		2.37	□□□□□ -2.03
CMR3	YPR013C	YPR203W	Q08994	102 aa		2.37	□□□□□ -2.03
CMR3	YPR013C	GSP1	P32835	219 aa	Known RBP	2.36	□□□□□ -2.03
CMR3	YPR013C	RPL33A	P05744	107 aa	Known RBP	2.35	□□□□□ -2.03
CMR3	YPR013C	YGL014C-A	P0C5N1	53 aa		2.35	□□□□□ -2.03
CMR3	YPR013C	TDA2	P40045	126 aa		2.35	□□□□□ -2.03
CMR3	YPR013C	RPS12	P48589	143 aa	Known RBP	2.35	□□□□□ -2.03
CMR3	YPR013C	RPL40A	P0CH08	128 aa	Known RBP	2.34	□□□□□ -2.03
CMR3	YPR013C	RPL40B	P0CH09	128 aa	Known RBP	2.34	□□□□□ -2.03
CMR3	YPR013C	YHR213W	P0CI67	198 aa		2.34	□□□□□ -2.03
CMR3	YPR013C	YHR212W-A	P0CX91	67 aa		2.34	□□□□□ -2.03
CMR3	YPR013C	SNT2	P53127	1403 aa		2.34	□□□□□ -2.04
CMR3	YPR013C	RPL36B	O14455	100 aa	Known RBP	2.33	□□□□□ -2.04
CMR3	YPR013C	RTC6	O14464	93 aa		2.33	□□□□□ -2.04
CMR3	YPR013C	RPL36A	P05745	100 aa	Predicted RBP	2.33	□□□□□ -2.04
CMR3	YPR013C	AQY2	P0CD90	149 aa		2.33	□□□□□ -2.04
CMR3	YPR013C	YHL037C	P38733	133 aa		2.33	□□□□□ -2.04
CMR3	YPR013C	YLR296W	Q05898	108 aa		2.33	□□□□□ -2.04
CMR3	YPR013C	TRM732	Q03496	1420 aa		2.33	□□□□□ -2.04
CMR3	YPR013C	UTP11	P34247	250 aa	Predicted RBP	2.32	□□□□□ -2.04
CMR3	YPR013C	LST8	P41318	303 aa		2.32	□□□□□ -2.04
CMR3	YPR013C	YMR122C	Q03879	124 aa		2.32	□□□□□ -2.04
CMR3	YPR013C	FYV7	Q12247	151 aa		2.32	□□□□□ -2.04
CMR3	YPR013C	BEM2	P39960	2167 aa	Known RBP	2.32	□□□□□ -2.04
CMR3	YPR013C	PFY1	P07274	126 aa		2.31	□□□□□ -2.04
CMR3	YPR013C	AIM18	P38884	321 aa		2.31	□□□□□ -2.04
CMR3	YPR013C	SEN15	Q04675	128 aa		2.31	□□□□□ -2.04
CMR3	YPR013C	TSC11	P40061	1430 aa		2.3	□□□□□ -2.04
CMR3	YPR013C	EMP24	P32803	203 aa	Known RBP	2.29	□□□□□ -2.04
CMR3	YPR013C	YGR164W	P53291	111 aa		2.29	□□□□□ -2.04
CMR3	YPR013C	GNA1	P43577	159 aa	Predicted RBP	2.28	□□□□□ -2.04
CMR3	YPR013C	HPA2	Q06592	156 aa		2.28	□□□□□ -2.04
CMR3	YPR013C	YPL261C	Q08976	102 aa		2.28	□□□□□ -2.04
CMR3	YPR013C	YLR365W	Q7LIF2	110 aa		2.28	□□□□□ -2.04
CMR3	YPR013C	GSC2	P40989	1895 aa		2.28	□□□□□ -2.04
CMR3	YPR013C	VAR1	P02381	398 aa		2.27	□□□□□ -2.05
CMR3	YPR013C	YHR130C	P38834	111 aa		2.27	□□□□□ -2.05
CMR3	YPR013C	OCA6	Q12454	224 aa		2.27	□□□□□ -2.05
CMR3	YPR013C	MED11	Q99278	115 aa		2.27	□□□□□ -2.05
CMR3	YPR013C	PAU12	P53343	120 aa		2.26	□□□□□ -2.05
CMR3	YPR013C	IRC21	Q04772	201 aa		2.26	□□□□□ -2.05
CMR3	YPR013C	YLR194C	Q05777	254 aa		2.26	□□□□□ -2.05

Retrieved 100 of 5,963 RNA–protein pairs in 115.4 ms