RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	VPS71	Q03433	280 aa		4.19	□□□□□ -1.74
NUP1	YOR098C	SHH3	Q04487	196 aa		4.19	□□□□□ -1.74
NUP1	YOR098C	YOL014W	Q08110	124 aa		4.19	□□□□□ -1.74
NUP1	YOR098C	SMT3	Q12306	101 aa	Known RBP	4.19	□□□□□ -1.74
NUP1	YOR098C	COX9	P07255	59 aa		4.19	□□□□□ -1.74
NUP1	YOR098C	MRPL27	P36526	146 aa	Predicted RBP	4.19	□□□□□ -1.74
NUP1	YOR098C	REE1	P40893	198 aa		4.19	□□□□□ -1.74
NUP1	YOR098C	EMC4	P53073	190 aa		4.19	□□□□□ -1.74
NUP1	YOR098C	DIG2	Q03373	323 aa	Known RBP	4.19	□□□□□ -1.74
NUP1	YOR098C	TMA23	Q03525	211 aa		4.19	□□□□□ -1.74
NUP1	YOR098C	NAT5	Q08689	176 aa		4.19	□□□□□ -1.74
NUP1	YOR098C	FMT1	P32785	401 aa		4.18	□□□□□ -1.74
NUP1	YOR098C	YDR366C	P87287	132 aa		4.18	□□□□□ -1.74
NUP1	YOR098C	BET1	P22804	142 aa		4.18	□□□□□ -1.74
NUP1	YOR098C	SCW4	P53334	386 aa	Known RBP	4.18	□□□□□ -1.74
NUP1	YOR098C	SAE3	P89114	91 aa		4.18	□□□□□ -1.74
NUP1	YOR098C	RPL14A	P36105	138 aa	Known RBP	4.17	□□□□□ -1.74
NUP1	YOR098C	RPL14B	P38754	138 aa	Known RBP	4.17	□□□□□ -1.74
NUP1	YOR098C	XPT1	P47165	209 aa		4.17	□□□□□ -1.74
NUP1	YOR098C	YPR114W	Q06107	315 aa		4.17	□□□□□ -1.74
NUP1	YOR098C	YAR068W	P39564	161 aa		4.17	□□□□□ -1.74
NUP1	YOR098C	YER188W	P40103	239 aa		4.17	□□□□□ -1.74
NUP1	YOR098C	YGR039W	P53225	103 aa		4.17	□□□□□ -1.74
NUP1	YOR098C	YDL211C	Q12121	372 aa		4.17	□□□□□ -1.74
NUP1	YOR098C	YAL067W-A	Q8TGK6	75 aa		4.17	□□□□□ -1.74
NUP1	YOR098C	YML100W-A	Q8TGT0	57 aa		4.17	□□□□□ -1.74
NUP1	YOR098C	SPC25	P40014	221 aa		4.17	□□□□□ -1.74
NUP1	YOR098C	NSA2	P40078	261 aa	Known RBP	4.17	□□□□□ -1.74
NUP1	YOR098C	PRE5	P40302	234 aa	Known RBP	4.17	□□□□□ -1.74
NUP1	YOR098C	SYM1	Q06563	197 aa		4.17	□□□□□ -1.74
NUP1	YOR098C	TIR1	P10863	254 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	AGA2	P32781	87 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	YBL059W	P34224	193 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	YFL019C	P43576	117 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	APS2	Q00381	147 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	CGI121	Q03705	181 aa	Known RBP	4.16	□□□□□ -1.74
NUP1	YOR098C	PAU19	P0CE85	124 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	PAU21	P0CE86	164 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	PAU22	P0CE87	164 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	ATP15	P21306	62 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	PAU3	P25610	124 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	YEA6	P39953	335 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	TVP23	P38962	199 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	RRT13	P40042	185 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	PIN3	Q06449	215 aa		4.16	□□□□□ -1.74
NUP1	YOR098C	TIF34	P40217	347 aa	Known RBP	4.15	□□□□□ -1.74
NUP1	YOR098C	TVP18	Q04767	167 aa		4.15	□□□□□ -1.74
NUP1	YOR098C	NAT3	Q06504	195 aa		4.15	□□□□□ -1.74
NUP1	YOR098C	FMP49	A0A023PZB3	126 aa		4.15	□□□□□ -1.75
NUP1	YOR098C	PHO85	P17157	305 aa		4.15	□□□□□ -1.75
NUP1	YOR098C	ATG39	Q06159	398 aa		4.15	□□□□□ -1.75
NUP1	YOR098C	FCY1	Q12178	158 aa		4.15	□□□□□ -1.75
NUP1	YOR098C	CPA1	P07258	411 aa	Known RBP	4.14	□□□□□ -1.75
NUP1	YOR098C	HAP3	P13434	144 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	MRPS9	P38120	278 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	YER181C	P40097	107 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	PAU5	P43575	122 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	SRL1	Q08673	210 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	TAD3	Q9URQ3	322 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	URA5	P13298	226 aa	Known RBP	4.14	□□□□□ -1.75
NUP1	YOR098C	PEX4	P29340	183 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	PHS1	P40857	217 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	CAX4	P53223	239 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	VPS28	Q02767	242 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	YNL200C	P40165	246 aa	Known RBP	4.14	□□□□□ -1.75
NUP1	YOR098C	RCE1	Q03530	315 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	UPS3	Q04006	179 aa		4.14	□□□□□ -1.75
NUP1	YOR098C	PRE1	P22141	198 aa	Known RBP	4.13	□□□□□ -1.75
NUP1	YOR098C	TOM40	P23644	387 aa	Known RBP	4.13	□□□□□ -1.75
NUP1	YOR098C	SRP21	P32342	167 aa		4.13	□□□□□ -1.75
NUP1	YOR098C	YHR140W	P38842	239 aa		4.13	□□□□□ -1.75
NUP1	YOR098C	DDI2	P0CH63	225 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	DDI3	P0CH64	225 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	SPT15	P13393	240 aa	Known RBP	4.12	□□□□□ -1.75
NUP1	YOR098C	HRT1	Q08273	121 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	ATO3	Q12359	275 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	VTC1	P40046	129 aa	RIP-Chip data	4.12	□□□□□ -1.75	not detected
NUP1	YOR098C	YGL193C	P53097	103 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	YLR412C-A	Q3E742	68 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	ISD11	Q6Q560	94 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	POR1	P04840	283 aa	Known RBP	4.12	□□□□□ -1.75
NUP1	YOR098C	COX10	P21592	462 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	TIM12	P32830	109 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	SWD3	P38123	315 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	FYV4	P38783	130 aa	Predicted RBP	4.12	□□□□□ -1.75
NUP1	YOR098C	GPI2	P46961	280 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	SCW10	Q04951	389 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	YNL277W-A	Q3E7Z0	62 aa		4.12	□□□□□ -1.75
NUP1	YOR098C	ARO2	P28777	376 aa	Known RBP	4.11	□□□□□ -1.75
NUP1	YOR098C	SFT1	P43682	97 aa		4.11	□□□□□ -1.75
NUP1	YOR098C	BOL1	Q3E793	110 aa		4.11	□□□□□ -1.75
NUP1	YOR098C	MSB2	P32334	1306 aa		4.11	□□□□□ -1.75
NUP1	YOR098C	COX5B	P00425	151 aa		4.11	□□□□□ -1.75
NUP1	YOR098C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
NUP1	YOR098C	GPI18	P38211	433 aa		4.11	□□□□□ -1.75
NUP1	YOR098C	YMR082C	Q04276	118 aa		4.11	□□□□□ -1.75
NUP1	YOR098C	COA2	Q3E823	68 aa		4.11	□□□□□ -1.75
NUP1	YOR098C	YKR070W	P36151	352 aa	Known RBP	4.1	□□□□□ -1.75
NUP1	YOR098C	PPT2	Q12036	173 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	YOL085C	Q99345	113 aa		4.1	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 73.7 ms