RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	YHR212W-A	P0CX91	67 aa		10.87	□□□□□ -0.67
DEP1	YAL013W	DAD2	P36162	133 aa		10.87	□□□□□ -0.67
DEP1	YAL013W	YDL186W	P48568	277 aa		10.87	□□□□□ -0.67
DEP1	YAL013W	MOT3	P54785	490 aa	Known RBP	10.87	□□□□□ -0.67
DEP1	YAL013W	DAD1	Q12248	94 aa		10.87	□□□□□ -0.67
DEP1	YAL013W	YLR342W-A	Q3E810	57 aa		10.87	□□□□□ -0.67
DEP1	YAL013W	MRPL31	P14063	131 aa	Predicted RBP	10.86	□□□□□ -0.67
DEP1	YAL013W	CUP2	P15315	225 aa		10.86	□□□□□ -0.67
DEP1	YAL013W	IRC22	P40006	225 aa		10.86	□□□□□ -0.67
DEP1	YAL013W	UTP23	Q12339	254 aa	Known RBP	10.86	□□□□□ -0.67
DEP1	YAL013W	UTR5	P32630	166 aa		10.85	□□□□□ -0.67
DEP1	YAL013W	PAM17	P36147	197 aa		10.85	□□□□□ -0.67
DEP1	YAL013W	MST28	P39552	234 aa		10.85	□□□□□ -0.67
DEP1	YAL013W	MST27	P53176	234 aa		10.85	□□□□□ -0.67
DEP1	YAL013W	YNL146C-A	Q3E7Z1	64 aa		10.85	□□□□□ -0.67
DEP1	YAL013W	TDA4	P47153	279 aa		10.84	□□□□□ -0.67
DEP1	YAL013W	ATG33	Q06485	197 aa		10.84	□□□□□ -0.67
DEP1	YAL013W	YGR035W-A	Q45U48	73 aa		10.84	□□□□□ -0.67
DEP1	YAL013W	TAR1	Q8TGM6	124 aa		10.84	□□□□□ -0.67
DEP1	YAL013W	PRE5	P40302	234 aa	Known RBP	10.83	□□□□□ -0.68
DEP1	YAL013W	YIP3	P53633	176 aa		10.83	□□□□□ -0.68
DEP1	YAL013W	ARL3	Q02804	198 aa		10.83	□□□□□ -0.68
DEP1	YAL013W	POR1	P04840	283 aa	Known RBP	10.82	□□□□□ -0.68
DEP1	YAL013W	CPT1	P17898	393 aa		10.82	□□□□□ -0.68
DEP1	YAL013W	YKL102C	P34249	101 aa		10.82	□□□□□ -0.68
DEP1	YAL013W	AGE2	P40529	298 aa		10.81	□□□□□ -0.68
DEP1	YAL013W	CCW12	Q12127	133 aa		10.81	□□□□□ -0.68
DEP1	YAL013W	PRM7	Q12459	698 aa		10.81	□□□□□ -0.68
DEP1	YAL013W	YOR011W-A	Q3E807	68 aa		10.81	□□□□□ -0.68
DEP1	YAL013W	MRPL49	P40858	161 aa	Predicted RBP	10.8	□□□□□ -0.68
DEP1	YAL013W	YGR149W	P48236	432 aa		10.8	□□□□□ -0.68
DEP1	YAL013W	RPL12A	P0CX53	165 aa	Known RBP	10.79	□□□□□ -0.68
DEP1	YAL013W	RPL12B	P0CX54	165 aa		10.79	□□□□□ -0.68
DEP1	YAL013W	MSN1	P22148	382 aa		10.79	□□□□□ -0.68
DEP1	YAL013W	SIM1	P40472	476 aa		10.79	□□□□□ -0.68
DEP1	YAL013W	CYT2	Q00873	224 aa		10.79	□□□□□ -0.68
DEP1	YAL013W	RRG8	Q06109	277 aa		10.79	□□□□□ -0.68
DEP1	YAL013W	CMC2	Q3E7A4	109 aa		10.79	□□□□□ -0.68
DEP1	YAL013W	MRPL28	P36527	147 aa		10.78	□□□□□ -0.68
DEP1	YAL013W	YHR022C	P38763	256 aa		10.78	□□□□□ -0.68
DEP1	YAL013W	RPB11	P38902	120 aa		10.78	□□□□□ -0.68
DEP1	YAL013W	UPS3	Q04006	179 aa		10.78	□□□□□ -0.68
DEP1	YAL013W	ARC18	Q05933	178 aa	Known RBP	10.78	□□□□□ -0.68
DEP1	YAL013W	YPL162C	Q12042	273 aa		10.78	□□□□□ -0.68
DEP1	YAL013W	YDR215C	Q12240	137 aa		10.78	□□□□□ -0.68
DEP1	YAL013W	RPS22B	Q3E7Y3	130 aa	Known RBP	10.78	□□□□□ -0.68
DEP1	YAL013W	YCR024C-B	Q3E7Z8	88 aa		10.78	□□□□□ -0.68
DEP1	YAL013W	YBR144C	P34215	104 aa		10.76	□□□□□ -0.69
DEP1	YAL013W	YJR096W	P47137	282 aa		10.76	□□□□□ -0.69
DEP1	YAL013W	YPR063C	Q12160	140 aa		10.76	□□□□□ -0.69
DEP1	YAL013W	TY1A-H	P0C2I4	478 aa	Known RBP	10.75	□□□□□ -0.69
DEP1	YAL013W	MPC2	P38857	129 aa		10.75	□□□□□ -0.69
DEP1	YAL013W	YMR244W	Q04018	355 aa		10.75	□□□□□ -0.69
DEP1	YAL013W	DXO1	Q06349	442 aa		10.75	□□□□□ -0.69
DEP1	YAL013W	MDM10	P18409	493 aa		10.74	□□□□□ -0.69
DEP1	YAL013W	PAU7	P39545	55 aa		10.74	□□□□□ -0.69
DEP1	YAL013W	YER135C	P40082	130 aa		10.74	□□□□□ -0.69
DEP1	YAL013W	COX16	P47081	118 aa		10.74	□□□□□ -0.69
DEP1	YAL013W	MIC26	P50087	233 aa		10.74	□□□□□ -0.69
DEP1	YAL013W	MED7	Q08278	222 aa		10.74	□□□□□ -0.69
DEP1	YAL013W	TIM22	Q12328	207 aa		10.74	□□□□□ -0.69
DEP1	YAL013W	VMA16	P23968	213 aa		10.72	□□□□□ -0.69
DEP1	YAL013W	CSM4	Q08955	156 aa		10.72	□□□□□ -0.69
DEP1	YAL013W	RTG1	P32607	177 aa		10.71	□□□□□ -0.69
DEP1	YAL013W	ECM33	P38248	429 aa	Known RBP	10.71	□□□□□ -0.69
DEP1	YAL013W	SDH8	P38345	138 aa		10.71	□□□□□ -0.69
DEP1	YAL013W	ALG13	P53178	202 aa		10.71	□□□□□ -0.69
DEP1	YAL013W	CUE4	Q04201	117 aa	Predicted RBP	10.71	□□□□□ -0.69
DEP1	YAL013W	VAR1	P02381	398 aa		10.7	□□□□□ -0.7
DEP1	YAL013W	SSS1	P35179	80 aa		10.7	□□□□□ -0.7
DEP1	YAL013W	MIG3	P39943	394 aa		10.7	□□□□□ -0.7
DEP1	YAL013W	SDS23	P53172	527 aa		10.7	□□□□□ -0.7
DEP1	YAL013W	MRPS8	Q03799	155 aa		10.7	□□□□□ -0.7
DEP1	YAL013W	POM33	Q12164	279 aa		10.7	□□□□□ -0.7
DEP1	YAL013W	SEC4	P07560	215 aa	Known RBP	10.69	□□□□□ -0.7
DEP1	YAL013W	RPL23A	P0CX41	137 aa	Known RBP	10.69	□□□□□ -0.7
DEP1	YAL013W	RPL23B	P0CX42	137 aa	Known RBP	10.69	□□□□□ -0.7
DEP1	YAL013W	THG1	P53215	237 aa	Known RBP	10.69	□□□□□ -0.7
DEP1	YAL013W	FSF1	Q12029	327 aa	Known RBP	10.69	□□□□□ -0.7
DEP1	YAL013W	YOL085C	Q99345	113 aa		10.69	□□□□□ -0.7
DEP1	YAL013W	RPL27A	P0C2H6	136 aa	Known RBP	10.68	□□□□□ -0.7
DEP1	YAL013W	ZRT1	P32804	376 aa		10.68	□□□□□ -0.7
DEP1	YAL013W	AGA1	P32323	725 aa		10.67	□□□□□ -0.7
DEP1	YAL013W	GPI19	Q04082	140 aa		10.67	□□□□□ -0.7
DEP1	YAL013W	GTO3	Q04806	366 aa		10.67	□□□□□ -0.7
DEP1	YAL013W	YDR274C	P87283	123 aa		10.66	□□□□□ -0.7
DEP1	YAL013W	YHR140W	P38842	239 aa		10.65	□□□□□ -0.7
DEP1	YAL013W	TMA17	Q12513	150 aa		10.65	□□□□□ -0.7
DEP1	YAL013W	BRP1	P53194	125 aa		10.64	□□□□□ -0.71
DEP1	YAL013W	DIA1	P54005	336 aa		10.64	□□□□□ -0.71
DEP1	YAL013W	OST3	P48439	350 aa		10.63	□□□□□ -0.71
DEP1	YAL013W	YGR017W	P53210	297 aa		10.63	□□□□□ -0.71
DEP1	YAL013W	MIG1	P27705	504 aa		10.62	□□□□□ -0.71
DEP1	YAL013W	YFR035C	P43608	114 aa		10.62	□□□□□ -0.71
DEP1	YAL013W	YBR200W-A	Q3E755	54 aa		10.62	□□□□□ -0.71
DEP1	YAL013W	GRH1	Q04410	372 aa	Known RBP	10.61	□□□□□ -0.71
DEP1	YAL013W	SEN15	Q04675	128 aa		10.61	□□□□□ -0.71
DEP1	YAL013W	YKR032W	P36127	104 aa		10.6	□□□□□ -0.71
DEP1	YAL013W	VPS71	Q03433	280 aa		10.6	□□□□□ -0.71
DEP1	YAL013W	FRS1	P15624	595 aa	Known RBP	10.59	□□□□□ -0.71

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