RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 IRX1P78414 480 aaPredicted RBP12.95□□□□□ -0.34
LDLR-205ENST00000557933 ACVR2BQ13705 512 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 TSNAXIP1Q2TAA8 658 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 AP1ARQ63HQ0 302 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 SLC30A9Q6PML9 568 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 CENPUQ71F23 418 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 PRPF39Q86UA1 669 aaKnown RBP12.95□□□□□ -0.34
LDLR-205ENST00000557933 GPD1LQ8N335 351 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 POU5F2Q8N7G0 328 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 RMDN3Q96TC7 470 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 MMP19Q99542 508 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 SMYD3Q9H7B4 428 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 ACSS2Q9NR19 701 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 LRRC42Q9Y546 428 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 GSC2O15499 205 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 GRAP2O75791 330 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 TROVE2P10155 538 aaKnown RBP eCLIP12.95□□□□□ -0.34
LDLR-205ENST00000557933 TNFSF9P41273 254 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 RAP1GAPP47736 663 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 ARL4CP56559 192 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 MMRN1Q13201 1228 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 KBTBD12Q3ZCT8 623 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 RNASEH2BQ5TBB1 312 aaKnown RBP12.95□□□□□ -0.34
LDLR-205ENST00000557933 LIN9Q5TKA1 542 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 SPOCD1Q6ZMY3 1216 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 ZNF526Q8TF50 670 aaPredicted RBP12.95□□□□□ -0.34
LDLR-205ENST00000557933 STMN2Q93045 179 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 SLC17A6Q9P2U8 582 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 RABGEF1Q9UJ41 708 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 B2RBV5 119 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 P4HA2O15460 535 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 LUC7L3O95232 432 aaKnown RBP12.94□□□□□ -0.34
LDLR-205ENST00000557933 CD19P15391 556 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 IL1R2P27930 398 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 CENPCQ03188 943 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 CDO1Q16878 200 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 SH3PXD2AQ5TCZ1 1133 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 TREML1Q86YW5 311 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 MAP4K3Q8IVH8 894 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 ARID3BQ8IVW6 561 aaPredicted RBP12.94□□□□□ -0.34
LDLR-205ENST00000557933 ALLCQ8N6M5 410 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 MTMR14Q8NCE2 650 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 CFAP61Q8NHU2 1237 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 JOSD2Q8TAC2 188 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 FEZF2Q8TBJ5 459 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 CPT1BQ92523 772 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 GRAMD1AQ96CP6 724 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 PGLYRP2Q96PD5 576 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 TCHPQ9BT92 498 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 IDI2Q9BXS1 227 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 PPARGC1AQ9UBK2 798 aaKnown RBP12.94□□□□□ -0.34
LDLR-205ENST00000557933 TMX2Q9Y320 296 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 RIPK3Q9Y572 518 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 STK24Q9Y6E0 443 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 PAPOLAP51003 745 aaKnown RBP12.94□□□□□ -0.34
LDLR-205ENST00000557933 GEMIN4P57678 1058 aaKnown RBP12.94□□□□□ -0.34
LDLR-205ENST00000557933 DNAJC24Q6P3W2 148 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 PPM1NQ8N819 430 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 ZNF606Q8WXB4 792 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 ZNF333Q96JL9 665 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 RIT2Q99578 217 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 THTPAQ9BU02 230 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 SPON1Q9HCB6 807 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.94□□□□□ -0.341e-6■■■□□ 15.9
LDLR-205ENST00000557933 NXF1Q9UBU9 619 aaKnown RBP12.94□□□□□ -0.34
LDLR-205ENST00000557933 SIPA1L1O43166 1804 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 ZNF536O15090 1300 aa12.94□□□□□ -0.34
LDLR-205ENST00000557933 MYH9P35579 1960 aaKnown RBP12.93□□□□□ -0.34
LDLR-205ENST00000557933 FCHO1O14526 889 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 SLC26A4O43511 780 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 RFC1P35251 1148 aaPredicted RBP12.93□□□□□ -0.34
LDLR-205ENST00000557933 PGM1P36871 562 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 ELK3P41970 407 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 NCKAP1LP55160 1127 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 CAV1Q03135 178 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 CUL2Q13617 745 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 UBAP2LQ14157 1087 aaKnown RBP12.93□□□□□ -0.34
LDLR-205ENST00000557933 PARP6Q2NL67 630 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 EML3Q32P44 896 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 CES4AQ5XG92 561 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 LRRC74BQ6ZQY2 392 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.93□□□□□ -0.34
LDLR-205ENST00000557933 SYTL5Q8TDW5 730 aaPredicted RBP12.93□□□□□ -0.34
LDLR-205ENST00000557933 CHURC1Q8WUH1 139 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 PPP1R16BQ96T49 567 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 SENP7Q9BQF6 1050 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 TRIM55Q9BYV6 548 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 POLR3FQ9H1D9 316 aaPredicted RBP12.93□□□□□ -0.34
LDLR-205ENST00000557933 RANBP17Q9H2T7 1088 aaKnown RBP12.93□□□□□ -0.34
LDLR-205ENST00000557933 KCND2Q9NZV8 630 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 FBXO40Q9UH90 709 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 XPO7Q9UIA9 1087 aaKnown RBP12.93□□□□□ -0.34
LDLR-205ENST00000557933 KBTBD13C9JR72 458 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 MT-ND3P03897 115 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 RPL22P35268 128 aaKnown RBP12.93□□□□□ -0.34
LDLR-205ENST00000557933 SKIV2L2P42285 1042 aaKnown RBP12.93□□□□□ -0.34
LDLR-205ENST00000557933 PTK7Q13308 1070 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 GPAT2Q6NUI2 795 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 KATNAL2Q8IYT4 538 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 KIAA0319LQ8IZA0 1049 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms