RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 PPEF2O14830 753 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 EIF3HO15372 352 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP39-214ENST00000474572 TREHO43280 583 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 RECQL4O94761 1208 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 ENDOD1O94919 500 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 TJP3O95049 919 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 IVLP07476 585 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 KRT7P08729 469 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 PSMA2P25787 234 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 PCK1P35558 622 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 CRYBB1P53674 252 aaPredicted RBP10.34□□□□□ -0.75
USP39-214ENST00000474572 YARSP54577 528 aaKnown RBP10.34□□□□□ -0.75
USP39-214ENST00000474572 IRX5P78411 483 aaPredicted RBP10.34□□□□□ -0.75
USP39-214ENST00000474572 PURAQ00577 322 aaKnown RBP10.34□□□□□ -0.75
USP39-214ENST00000474572 ADCY2Q08462 1091 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 MYO1EQ12965 1108 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 CALCOCO2Q13137 446 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 OASLQ15646 514 aaKnown RBP10.34□□□□□ -0.75
USP39-214ENST00000474572 TNFAIP8L3Q5GJ75 292 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 TFDP3Q5H9I0 405 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 C9orf57Q5W0N0 161 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 KCTD16Q68DU8 428 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 TRMT10CQ7L0Y3 403 aaKnown RBP10.34□□□□□ -0.75
USP39-214ENST00000474572 HOOK3Q86VS8 718 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 CCDC89Q8N998 374 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 CCHCR1Q8TD31 782 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 IPO4Q8TEX9 1081 aaKnown RBP10.34□□□□□ -0.75
USP39-214ENST00000474572 STK32AQ8WU08 396 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 TMEM40Q8WWA1 233 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 DNAJB3Q8WWF6 145 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 RAPGEF5Q92565 580 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 LENG1Q96BZ8 264 aaPredicted RBP10.34□□□□□ -0.75
USP39-214ENST00000474572 PGM2Q96G03 612 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 TRAIPQ9BWF2 469 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 HEMGNQ9BXL5 484 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 SLC4A5Q9BY07 1137 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 FOXP3Q9BZS1 431 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 CXCL16Q9H2A7 254 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 GDAP2Q9NXN4 497 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 TUBGCP4Q9UGJ1 667 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 SLC12A6Q9UHW9 1150 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 TSPAN16Q9UKR8 245 aa10.34□□□□□ -0.75
USP39-214ENST00000474572 C17orf102A2RUQ5 167 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 ERICH4A6NGS2 130 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 PI4K2BG5E9Z4 385 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 GOLGA8SH3BPF8 625 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 XPOTO43592 962 aaKnown RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 KPNA6O60684 536 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 CD4P01730 458 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 SHBGP04278 402 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 ITGAVP06756 1048 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 FAM163BP0C2L3 166 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 KRT10P13645 584 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 AKR1A1P14550 325 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 ATF2P15336 505 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 CYP2B6P20813 491 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 IL1R2P27930 398 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 GJC1P36383 396 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 SCNN1AP37088 669 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 RPL34P49207 117 aaKnown RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 ZNF157P51786 506 aaPredicted RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 VCPP55072 806 aaKnown RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 TMEM62Q0P6H9 643 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 ORC1Q13415 861 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 SNX1Q13596 522 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 HADHQ16836 314 aaKnown RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 KRT71Q3SY84 523 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 DENND2CQ68D51 928 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 TRNP1Q6NT89 227 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 HIBCHQ6NVY1 386 aaPredicted RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 BBS12Q6ZW61 710 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 CYP4V2Q6ZWL3 525 aaPredicted RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 SAPCD2Q86UD0 394 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 ALLCQ8N6M5 410 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 CMASQ8NFW8 434 aaPredicted RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 SLC35B2Q8TB61 432 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 MRPL45Q9BRJ2 306 aaKnown RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 AP5M1Q9H0R1 490 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 UPF3AQ9H1J1 476 aaKnown RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 CDC42EP4Q9H3Q1 356 aaKnown RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 SEMA4AQ9H3S1 761 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 NXF3Q9H4D5 531 aaKnown RBP10.33□□□□□ -0.76
USP39-214ENST00000474572 ZFYVE28Q9HCC9 887 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 NMRK2Q9NPI5 230 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 CYLDQ9NQC7 956 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 CALCOCO1Q9P1Z2 691 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 ASIC3Q9UHC3 531 aa10.33□□□□□ -0.76
USP39-214ENST00000474572 COL4A4P53420 1690 aaPredicted RBP10.32□□□□□ -0.76
USP39-214ENST00000474572 C2CD4BA6NLJ0 364 aa10.32□□□□□ -0.76
USP39-214ENST00000474572 FAM155AB1AL88 458 aaPredicted RBP10.32□□□□□ -0.76
USP39-214ENST00000474572 DNALI1O14645 258 aaPredicted RBP10.32□□□□□ -0.76
USP39-214ENST00000474572 NDC80O14777 642 aa10.32□□□□□ -0.76
USP39-214ENST00000474572 DUSP11O75319 330 aaKnown RBP10.32□□□□□ -0.76
USP39-214ENST00000474572 TRUB2O95900 331 aaKnown RBP10.32□□□□□ -0.76
USP39-214ENST00000474572 MYL3P08590 195 aa10.32□□□□□ -0.76
USP39-214ENST00000474572 GNAT1P11488 350 aa10.32□□□□□ -0.76
USP39-214ENST00000474572 CYBAP13498 195 aa10.32□□□□□ -0.76
USP39-214ENST00000474572 ATF7P17544 494 aaPredicted RBP10.32□□□□□ -0.76
USP39-214ENST00000474572 GPD1P21695 349 aa10.32□□□□□ -0.76
USP39-214ENST00000474572 KDELR1P24390 212 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms