RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W YPD1Q07688 167 aa1.7□□□□□ -2.14
VPS28YPL065W RFU1Q08003 200 aa1.7□□□□□ -2.14
VPS28YPL065W YAR064WP39563 99 aa1.69□□□□□ -2.14
VPS28YPL065W GLC8P41818 229 aa1.69□□□□□ -2.14
VPS28YPL065W RCF2P53721 224 aa1.69□□□□□ -2.14
VPS28YPL065W NMA1Q06178 401 aaKnown RBP1.69□□□□□ -2.14
VPS28YPL065W SRP21P32342 167 aa1.68□□□□□ -2.14
VPS28YPL065W IRC19Q07843 230 aa1.68□□□□□ -2.14
VPS28YPL065W CCW12Q12127 133 aa1.68□□□□□ -2.14
VPS28YPL065W YJR015WP47090 510 aa1.67□□□□□ -2.14
VPS28YPL065W RPL37BP51402 88 aaKnown RBP1.67□□□□□ -2.14
VPS28YPL065W YDC1Q02896 317 aa1.67□□□□□ -2.14
VPS28YPL065W IPT1P38954 527 aa1.66□□□□□ -2.14
VPS28YPL065W APS3P47064 194 aa1.66□□□□□ -2.14
VPS28YPL065W EFM5P53200 248 aaKnown RBP1.66□□□□□ -2.14
VPS28YPL065W KEI1Q06346 221 aa1.66□□□□□ -2.14
VPS28YPL065W YGL041W-AP0C5N3 154 aa1.65□□□□□ -2.15
VPS28YPL065W PET54P10834 293 aa1.65□□□□□ -2.15
VPS28YPL065W DDR48P18899 430 aaKnown RBP1.65□□□□□ -2.15
VPS28YPL065W YBR027CP38220 110 aa1.65□□□□□ -2.15
VPS28YPL065W RRT7Q07829 113 aa1.65□□□□□ -2.15
VPS28YPL065W UBR1P19812 1950 aa1.64□□□□□ -2.15
VPS28YPL065W YIL102CP40488 101 aa1.63□□□□□ -2.15
VPS28YPL065W EST3Q03096 181 aa1.63□□□□□ -2.15
VPS28YPL065W VAM10Q08474 114 aa1.63□□□□□ -2.15
VPS28YPL065W UGX2P32772 223 aa1.62□□□□□ -2.15
VPS28YPL065W ECM31P38122 312 aa1.62□□□□□ -2.15
VPS28YPL065W IPI1P38803 334 aaPredicted RBP1.62□□□□□ -2.15
VPS28YPL065W RAV2Q03956 351 aa1.62□□□□□ -2.15
VPS28YPL065W PKR1Q03880 122 aaKnown RBP1.61□□□□□ -2.15
VPS28YPL065W SCS22Q6Q595 175 aa1.61□□□□□ -2.15
VPS28YPL065W MOG1P47123 218 aa1.6□□□□□ -2.15
VPS28YPL065W YPR153WQ06537 140 aa1.6□□□□□ -2.15
VPS28YPL065W YOR1P53049 1477 aa1.59□□□□□ -2.15
VPS28YPL065W YER188C-AP0C0V2 99 aa1.59□□□□□ -2.15
VPS28YPL065W HSP12P22943 109 aaKnown RBP1.59□□□□□ -2.15
VPS28YPL065W ATP19P81451 68 aa1.59□□□□□ -2.15
VPS28YPL065W YCR001WP25347 104 aa1.58□□□□□ -2.16
VPS28YPL065W AIM36Q03798 255 aa1.58□□□□□ -2.16
VPS28YPL065W YMR320WQ04897 101 aa1.58□□□□□ -2.16
VPS28YPL065W HFA1P32874 2273 aa1.57□□□□□ -2.16
VPS28YPL065W YOL013W-AP0C272 63 aaPredicted RBP1.57□□□□□ -2.16
VPS28YPL065W HYP2P23301 157 aaKnown RBP1.57□□□□□ -2.16
VPS28YPL065W ATG8P38182 117 aaRIP-Chip data1.57□□□□□ -2.16not detected
VPS28YPL065W GPI2P46961 280 aa1.57□□□□□ -2.16
VPS28YPL065W TMA23Q03525 211 aa1.57□□□□□ -2.16
VPS28YPL065W GPI11Q06636 219 aa1.57□□□□□ -2.16
VPS28YPL065W CDC39P25655 2108 aaKnown RBP1.57□□□□□ -2.16
VPS28YPL065W YGR201CP42936 225 aa1.56□□□□□ -2.16
VPS28YPL065W COX5BP00425 151 aa1.55□□□□□ -2.16
VPS28YPL065W SED1Q01589 338 aa1.54□□□□□ -2.16
VPS28YPL065W NHP6AP11632 93 aaKnown RBP1.53□□□□□ -2.16
VPS28YPL065W YNL122CP53921 115 aaPredicted RBP1.52□□□□□ -2.17
VPS28YPL065W HSL1P34244 1518 aa1.51□□□□□ -2.17
VPS28YPL065W FMP49A0A023PZB3 126 aa1.51□□□□□ -2.17
VPS28YPL065W YCL001W-AP87012 153 aa1.51□□□□□ -2.17
VPS28YPL065W SEN15Q04675 128 aa1.51□□□□□ -2.17
VPS28YPL065W RIB3Q99258 208 aa1.51□□□□□ -2.17
VPS28YPL065W RPL33AP05744 107 aaKnown RBP1.5□□□□□ -2.17
VPS28YPL065W FYV5P25585 152 aa1.5□□□□□ -2.17
VPS28YPL065W SUI1P32911 108 aaKnown RBP1.5□□□□□ -2.17
VPS28YPL065W YDR366CP87287 132 aa1.5□□□□□ -2.17
VPS28YPL065W RPS1BP23248 255 aaKnown RBP1.49□□□□□ -2.17
VPS28YPL065W YAP3P38749 330 aa1.49□□□□□ -2.17
VPS28YPL065W DIE2P50076 525 aa1.49□□□□□ -2.17
VPS28YPL065W LSM1P47017 172 aaKnown RBP1.48□□□□□ -2.17
VPS28YPL065W VMA10P48836 114 aaKnown RBP1.48□□□□□ -2.17
VPS28YPL065W SOM1Q05676 74 aa1.48□□□□□ -2.17
VPS28YPL065W COF1Q03048 143 aaKnown RBP1.47□□□□□ -2.17
VPS28YPL065W HUT1Q12520 339 aa1.47□□□□□ -2.17
VPS28YPL065W DDP1Q99321 188 aaKnown RBP1.47□□□□□ -2.17
VPS28YPL065W ROM2P51862 1356 aaKnown RBP1.47□□□□□ -2.17
VPS28YPL065W YGL014C-AP0C5N1 53 aa1.46□□□□□ -2.18
VPS28YPL065W PHB1P40961 287 aa1.46□□□□□ -2.18
VPS28YPL065W RBL2P48606 106 aaKnown RBP1.46□□□□□ -2.18
VPS28YPL065W MHF1Q3E835 90 aa1.46□□□□□ -2.18
VPS28YPL065W HAP2P06774 265 aa1.45□□□□□ -2.18
VPS28YPL065W HHO1P53551 258 aa1.45□□□□□ -2.18
VPS28YPL065W YOR385WQ08909 290 aa1.45□□□□□ -2.18
VPS28YPL065W YHR140WP38842 239 aa1.44□□□□□ -2.18
VPS28YPL065W HHY1P39982 102 aa1.44□□□□□ -2.18
VPS28YPL065W MGR2Q02889 113 aa1.44□□□□□ -2.18
VPS28YPL065W SPC3Q12133 184 aa1.44□□□□□ -2.18
VPS28YPL065W RAF1Q06891 181 aa1.43□□□□□ -2.18
VPS28YPL065W YGR039WP53225 103 aa1.42□□□□□ -2.18
VPS28YPL065W YMR122CQ03879 124 aa1.42□□□□□ -2.18
VPS28YPL065W YOR072WQ08486 104 aa1.42□□□□□ -2.18
VPS28YPL065W LSM8P47093 109 aaKnown RBP1.41□□□□□ -2.18
VPS28YPL065W YHR213W-BQ8TGK1 99 aa1.41□□□□□ -2.18
VPS28YPL065W RPS22AP0C0W1 130 aaKnown RBP1.4□□□□□ -2.19
VPS28YPL065W SRL3P36167 246 aa1.4□□□□□ -2.19
VPS28YPL065W SPG1P50088 95 aa1.4□□□□□ -2.19
VPS28YPL065W YNL019CP53975 284 aa1.4□□□□□ -2.19
VPS28YPL065W RPS22BQ3E7Y3 130 aaKnown RBP1.4□□□□□ -2.19
VPS28YPL065W LST8P41318 303 aa1.39□□□□□ -2.19
VPS28YPL065W NAT5Q08689 176 aa1.39□□□□□ -2.19
VPS28YPL065W RPS1AP33442 255 aaKnown RBP1.38□□□□□ -2.19
VPS28YPL065W EMC4P53073 190 aa1.38□□□□□ -2.19
VPS28YPL065W PRM3Q08931 133 aa1.38□□□□□ -2.19
VPS28YPL065W RPL40AP0CH08 128 aaKnown RBP1.37□□□□□ -2.19
Retrieved 100 of 5,963 RNA–protein pairs in 49.5 ms