RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 KRT3P12035 628 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 RARGP13631 454 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 KRT10P13645 584 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 ITIH2P19823 946 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 TRIP13Q15645 432 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 UBAP2Q5T6F2 1119 aaKnown RBP22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 CST9Q5W186 159 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 XYLT1Q86Y38 959 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 CXCL16Q9H2A7 254 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 CDHR5Q9HBB8 845 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 BARX2Q9UMQ3 279 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 VDRP11473 427 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 PSMA2P25787 234 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 IRF5Q13568 498 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 ZFYVE27Q5T4F4 411 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 FOXR1Q6PIV2 292 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 SPOCD1Q6ZMY3 1216 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 PKNOX2Q96KN3 472 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 DDX56Q9NY93 547 aaKnown RBP22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 BCCIPQ9P287 314 aaKnown RBP eCLIP22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 WDR35Q9P2L0 1181 aa22.28■■□□□ 1.16
CCDC88B-208ENST00000492980 MBLAC1A4D2B0 266 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 M0QYV0 167 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 HPDP32754 393 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 PTPN7P35236 360 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 NDST1P52848 882 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 COPS2P61201 443 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 SLC29A2Q14542 456 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 CNGA2Q16280 664 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 OLFML2BQ68BL8 750 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 SLC27A1Q6PCB7 646 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 CATSPER4Q7RTX7 472 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 FNIP1Q8TF40 1166 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 RAPGEF5Q92565 580 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 LENG1Q96BZ8 264 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 HEXIM2Q96MH2 286 aaKnown RBP22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 FAM124BQ9H5Z6 455 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 PLEKHA5Q9HAU0 1116 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 AAASQ9NRG9 546 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 SNTG2Q9NY99 539 aa22.27■■□□□ 1.16
CCDC88B-208ENST00000492980 SMIM35A0A1B0GVV1 85 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 IGF2BP3O00425 579 aaKnown RBP eCLIP22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 HMGCRP04035 888 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 ZNF865P0CJ78 1059 aaPredicted RBP22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 ATF2P15336 505 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 ATF7P17544 494 aaPredicted RBP22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 GPD2P43304 727 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 CDC42EP1Q00587 391 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 ZNF268Q14587 947 aaPredicted RBP22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 KAZNQ674X7 775 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 TLK2Q86UE8 772 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 HOOK3Q86VS8 718 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 ACSF2Q96CM8 615 aaPredicted RBP22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 OSMRQ99650 979 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 EIF2AQ9BY44 585 aaKnown RBP22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 SYNCQ9H7C4 482 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 CWC15Q9P013 229 aaKnown RBP22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 NOVA2Q9UNW9 492 aaKnown RBP22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 DERAQ9Y315 318 aa22.27■■□□□ 1.15
CCDC88B-208ENST00000492980 RIPK2O43353 540 aa22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 TJP3O95049 919 aa22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 CYP2C9P11712 490 aa22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 GABRB2P47870 512 aa22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 IRX5P78411 483 aaPredicted RBP22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 GUCY1A3Q02108 690 aa22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 SLC25A11Q02978 314 aaKnown RBP22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 HIC1Q14526 733 aa22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 POLNQ7Z5Q5 900 aa22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 APBB1IPQ7Z5R6 666 aaPredicted RBP22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 ARFGAP2Q8N6H7 521 aa22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 ARFGAP1Q8N6T3 406 aa22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 SNX27Q96L92 541 aa22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 ZMAT2Q96NC0 199 aaKnown RBP22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 METTL5Q9NRN9 209 aaKnown RBP22.26■■□□□ 1.15
CCDC88B-208ENST00000492980 hCG_1818297A0A087WSY0 165 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 LIASO43766 372 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 ITGA8P53708 1063 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 MFSD10Q14728 455 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 CCDC25Q86WR0 208 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 TTC39CQ8N584 583 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 LRCH4O75427 683 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 DARSP14868 501 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 CYP3A5P20815 502 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 ADCY8P40145 1251 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 MDH1P40925 334 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 CDKN2BP42772 138 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 HUNKP57058 714 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 TFDP3Q5H9I0 405 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 EMC1Q8N766 993 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 TLCD1Q96CP7 247 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 MCRS1Q96EZ8 462 aa22.25■■□□□ 1.15
CCDC88B-208ENST00000492980 LRRD1A4D1F6 860 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 DCDC2CA8MYV0 355 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 CAND2O75155 1236 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 CHKAP35790 457 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 VPS41P49754 854 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 CAV1Q03135 178 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 MYO1EQ12965 1108 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 ODF2Q5BJF6 829 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 NOTUMQ6P988 496 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms