RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 TUBGCP4Q9UGJ1 667 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 GAS8O95995 478 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 TFRCP02786 760 aaKnown RBP6.37□□□□□ -1.39
VPS50-205ENST00000441602 GJC1P36383 396 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 FNTAP49354 379 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 BCAT1P54687 386 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 IRX5P78411 483 aaPredicted RBP6.37□□□□□ -1.39
VPS50-205ENST00000441602 FAM26DQ5JW98 314 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 ALKAL1Q6UXT8 129 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 KATNAL2Q8IYT4 538 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 ADGRF2Q8IZF7 708 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 STK32AQ8WU08 396 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 TFAP2BQ92481 460 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 AP1M1Q9BXS5 423 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 SDCBP2Q9H190 292 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 EPC1Q9H2F5 836 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 EHD2Q9NZN4 543 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 MTRF1LQ9UGC7 380 aaKnown RBP6.37□□□□□ -1.39
VPS50-205ENST00000441602 DSEQ9UL01 958 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 HES2Q9Y543 173 aa6.37□□□□□ -1.39
VPS50-205ENST00000441602 TMEM191CA6NGB0 347 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 PIRO00625 290 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 SART1O43290 800 aaKnown RBP6.36□□□□□ -1.39
VPS50-205ENST00000441602 HSF2BPO75031 334 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 ZNF623O75123 536 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 CALCAP01258 141 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 ERBB2P04626 1255 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 WARSP23381 471 aaKnown RBP6.36□□□□□ -1.39
VPS50-205ENST00000441602 MYH10P35580 1976 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 LHX1P48742 406 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 DR1Q01658 176 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 TRIM32Q13049 653 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 ZNF211Q13398 564 aaPredicted RBP6.36□□□□□ -1.39
VPS50-205ENST00000441602 MTMR3Q13615 1198 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 MRPL10Q7Z7H8 261 aaKnown RBP6.36□□□□□ -1.39
VPS50-205ENST00000441602 BBOF1Q8ND07 529 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 PPP1R13LQ8WUF5 828 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 TMEM40Q8WWA1 233 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 MCEEQ96PE7 176 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 RSAD1Q9HA92 442 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 EPB41L5Q9HCM4 733 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 SMARCAL1Q9NZC9 954 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 TMEM59LQ9UK28 342 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 OPA1O60313 960 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 GHRP10912 638 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 PCSK1P29120 753 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 SCNN1AP37088 669 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 MGAT3Q09327 533 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 BST2Q10589 180 aaKnown RBP6.36□□□□□ -1.39
VPS50-205ENST00000441602 GRIK3Q13003 919 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 PDCLQ13371 301 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 HIC1Q14526 733 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 BEND6Q5SZJ8 279 aaPredicted RBP6.36□□□□□ -1.39
VPS50-205ENST00000441602 CFAP58Q5T655 872 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 FAM102AQ5T9C2 384 aaPredicted RBP6.36□□□□□ -1.39
VPS50-205ENST00000441602 SND1Q7KZF4 910 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS50-205ENST00000441602 PHLDB2Q86SQ0 1253 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 CCDC105Q8IYK2 499 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 NIPA2Q8N8Q9 360 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 TTC13Q8NBP0 860 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 RNF169Q8NCN4 708 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 SMG8Q8ND04 991 aaKnown RBP6.36□□□□□ -1.39
VPS50-205ENST00000441602 CCHCR1Q8TD31 782 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 IFT81Q8WYA0 676 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 CD101Q93033 1021 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 C18orf25Q96B23 403 aaPredicted RBP6.36□□□□□ -1.39
VPS50-205ENST00000441602 MED10Q9BTT4 135 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 TRAIPQ9BWF2 469 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 FTHL17Q9BXU8 183 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 FRMD8P1Q9BZ68 369 aaPredicted RBP6.36□□□□□ -1.39
VPS50-205ENST00000441602 TSPAN16Q9UKR8 245 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 DOCK3Q8IZD9 2030 aa6.36□□□□□ -1.39
VPS50-205ENST00000441602 CYB561D2O14569 222 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 RAD51CO43502 376 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 SEC31AO94979 1220 aaKnown RBP6.35□□□□□ -1.39
VPS50-205ENST00000441602 TJP3O95049 919 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 ECEL1O95672 775 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 ODC1P11926 461 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 GPD1P21695 349 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 SSTR3P32745 418 aaPredicted RBP6.35□□□□□ -1.39
VPS50-205ENST00000441602 PEX5P50542 639 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 GLB1LQ6UWU2 654 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 POLNQ7Z5Q5 900 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 ACOT1Q86TX2 421 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 CRYBG2Q8N1P7 616 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 CXorf38Q8TB03 319 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 ALG3Q92685 438 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 KRT35Q92764 455 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 BTBD6Q96KE9 485 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 HSFY1Q96LI6 401 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 ZMAT2Q96NC0 199 aaKnown RBP6.35□□□□□ -1.39
VPS50-205ENST00000441602 DDX47Q9H0S4 455 aaKnown RBP6.35□□□□□ -1.39
VPS50-205ENST00000441602 TSPYL1Q9H0U9 437 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 TSPYL2Q9H2G4 693 aaPredicted RBP6.35□□□□□ -1.39
VPS50-205ENST00000441602 GDF3Q9NR23 364 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 PADI3Q9ULW8 664 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 RALGAPA2Q2PPJ7 1873 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 FAM170AA1A519 330 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 FSCN2O14926 492 aa6.35□□□□□ -1.39
VPS50-205ENST00000441602 COL6A1P12109 1028 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms