RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 TPD52L1Q16890 204 aaPredicted RBP17.92■□□□□ 0.46
SDCBP-201ENST00000260130 LRRC8AQ8IWT6 810 aa17.92■□□□□ 0.46
SDCBP-201ENST00000260130 FBXL13Q8NEE6 735 aa17.92■□□□□ 0.46
SDCBP-201ENST00000260130 PI4K2AQ9BTU6 479 aa17.92■□□□□ 0.46
SDCBP-201ENST00000260130 PIDD1Q9HB75 910 aa17.92■□□□□ 0.46
SDCBP-201ENST00000260130 MTMR11A4FU01 709 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 ACAT1P24752 427 aaKnown RBP17.91■□□□□ 0.46
SDCBP-201ENST00000260130 LMO2P25791 158 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 GNL1P36915 607 aaPredicted RBP17.91■□□□□ 0.46
SDCBP-201ENST00000260130 DUSP4Q13115 394 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 CBWD6Q4V339 395 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 CBWD3Q5JTY5 395 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 CBWD5Q5RIA9 395 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 ATAD1Q8NBU5 361 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 CCDC150Q8NCX0 1101 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 PHF7Q9BWX1 381 aaPredicted RBP17.91■□□□□ 0.46
SDCBP-201ENST00000260130 SNX25Q9H3E2 840 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 RAB20Q9NX57 234 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 TSC2P49815 1807 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 CCL16O15467 120 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 INTS6LQ5JSJ4 861 aaKnown RBP17.91■□□□□ 0.46
SDCBP-201ENST00000260130 SPOPLQ6IQ16 392 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 TRIM59Q8IWR1 403 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 DHX40Q8IX18 779 aaKnown RBP17.91■□□□□ 0.46
SDCBP-201ENST00000260130 OR6B3Q8NGW1 331 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 SEMA4DQ92854 862 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 POMKQ9H5K3 350 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.91■□□□□ 0.462e-6■■■■■ 96.1
SDCBP-201ENST00000260130 COQ4Q9Y3A0 265 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 INSL5Q9Y5Q6 135 aa17.91■□□□□ 0.46
SDCBP-201ENST00000260130 HCRTO43612 131 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 XYLBO75191 536 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 LRRN2O75325 713 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 LRG1P02750 347 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 PDGFRBP09619 1106 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 CDH8P55286 799 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 ADHFE1Q8IWW8 467 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 C2orf15Q8WU43 125 aaKnown RBP17.9■□□□□ 0.46
SDCBP-201ENST00000260130 CRISPLD1Q9H336 500 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 SMYD3Q9H7B4 428 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 HSFX1Q9UBD0 423 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 CDH9Q9ULB4 789 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 SLC27A5Q9Y2P5 690 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 MTCL1Q9Y4B5 1905 aaKnown RBP17.9■□□□□ 0.46
SDCBP-201ENST00000260130 POU2F2P09086 479 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 FMO5P49326 533 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 NOP14P78316 857 aaKnown RBP17.9■□□□□ 0.46
SDCBP-201ENST00000260130 NFE2Q16621 373 aaPredicted RBP17.9■□□□□ 0.46
SDCBP-201ENST00000260130 NECAB3Q96P71 396 aaPredicted RBP17.9■□□□□ 0.46
SDCBP-201ENST00000260130 UHRF1Q96T88 793 aaPredicted RBP17.9■□□□□ 0.46
SDCBP-201ENST00000260130 APOBEC3GQ9HC16 384 aaKnown RBP17.9■□□□□ 0.46
SDCBP-201ENST00000260130 GTF3C4Q9UKN8 822 aa17.9■□□□□ 0.46
SDCBP-201ENST00000260130 CDR1P51861 262 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 ZP2Q05996 745 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 SCARA5Q6ZMJ2 495 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 IRF2BP1Q8IU81 584 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 CREBRFQ8IUR6 639 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 SPPL2BQ8TCT7 592 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 CNOT6LQ96LI5 555 aaKnown RBP17.89■□□□□ 0.45
SDCBP-201ENST00000260130 PKMYT1Q99640 499 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 SYT15Q9BQS2 421 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 THAP9Q9H5L6 903 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 WDR6Q9NNW5 1121 aaKnown RBP17.89■□□□□ 0.45
SDCBP-201ENST00000260130 TMLHEQ9NVH6 421 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.89■□□□□ 0.45
SDCBP-201ENST00000260130 PMM2O15305 246 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 ASPAP45381 313 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 RAP1GAPP47736 663 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 WDR44Q5JSH3 913 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 FAM171BQ6P995 826 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 PKNOX2Q96KN3 472 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 SDCBP2Q9H190 292 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 NME7Q9Y5B8 376 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 PCDHB5Q9Y5E4 795 aa17.89■□□□□ 0.45
SDCBP-201ENST00000260130 MYBPHLA2RUH7 354 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 A8MXQ7 604 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 N4BP1O75113 896 aaKnown RBP17.88■□□□□ 0.45
SDCBP-201ENST00000260130 ATP2C2O75185 946 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 TUFMP49411 452 aaKnown RBP17.88■□□□□ 0.45
SDCBP-201ENST00000260130 GSDMDP57764 484 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 TWF1Q12792 350 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 KCNH2Q12809 1159 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 GRASPQ7Z6J2 395 aaPredicted RBP17.88■□□□□ 0.45
SDCBP-201ENST00000260130 TTC9BQ8N6N2 239 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 CCDC112Q8NEF3 446 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 RPGRIP1Q96KN7 1286 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 BCO2Q9BYV7 579 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 NIF3L1Q9GZT8 377 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 ABI2Q9NYB9 513 aaPredicted RBP17.88■□□□□ 0.45
SDCBP-201ENST00000260130 YIPF1Q9Y548 306 aa17.88■□□□□ 0.45
SDCBP-201ENST00000260130 ALDH1A3P47895 512 aa17.87■□□□□ 0.45
SDCBP-201ENST00000260130 PSMC1P62191 440 aaKnown RBP17.87■□□□□ 0.45
SDCBP-201ENST00000260130 CETN1Q12798 172 aa17.87■□□□□ 0.45
SDCBP-201ENST00000260130 AOPEPQ8N6M6 819 aa17.87■□□□□ 0.45
SDCBP-201ENST00000260130 ENOX1Q8TC92 643 aaKnown RBP17.87■□□□□ 0.45
SDCBP-201ENST00000260130 FAXDC2Q96IV6 333 aa17.87■□□□□ 0.45
SDCBP-201ENST00000260130 BPIFA3Q9BQP9 254 aa17.87■□□□□ 0.45
SDCBP-201ENST00000260130 CYP3A43Q9HB55 503 aa17.87■□□□□ 0.45
SDCBP-201ENST00000260130 CRTAC1Q9NQ79 661 aa17.87■□□□□ 0.45
SDCBP-201ENST00000260130 DNMT3BQ9UBC3 853 aaKnown RBP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms