RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	YBL058W	YNR071C	P53757	342 aa		4.29	□□□□□ -1.72
SHP1	YBL058W	LSM7	P53905	115 aa	Known RBP	4.29	□□□□□ -1.72
SHP1	YBL058W	TIM44	Q01852	431 aa		4.29	□□□□□ -1.72
SHP1	YBL058W	DCS1	Q06151	350 aa		4.29	□□□□□ -1.72
SHP1	YBL058W	VAM10	Q08474	114 aa		4.29	□□□□□ -1.72
SHP1	YBL058W	YPL162C	Q12042	273 aa		4.29	□□□□□ -1.72
SHP1	YBL058W	TPI1	P00942	248 aa	Known RBP	4.28	□□□□□ -1.72
SHP1	YBL058W	YHR213W	P0CI67	198 aa		4.28	□□□□□ -1.72
SHP1	YBL058W	ECM25	P32525	599 aa		4.28	□□□□□ -1.72
SHP1	YBL058W	CMC1	P36064	111 aa		4.28	□□□□□ -1.72
SHP1	YBL058W	VMA22	P38784	181 aa		4.28	□□□□□ -1.72
SHP1	YBL058W	HXT14	P42833	540 aa		4.28	□□□□□ -1.72
SHP1	YBL058W	LST7	P53237	242 aa		4.28	□□□□□ -1.72
SHP1	YBL058W	HAL1	Q01766	294 aa		4.28	□□□□□ -1.72
SHP1	YBL058W	YMR244W	Q04018	355 aa		4.28	□□□□□ -1.72
SHP1	YBL058W	POS5	Q06892	414 aa		4.28	□□□□□ -1.72
SHP1	YBL058W	YNL146C-A	Q3E7Z1	64 aa		4.28	□□□□□ -1.72
SHP1	YBL058W	FCY2	P17064	533 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	ZRC1	P20107	442 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	SPT14	P32363	452 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	RRF1	P38771	230 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	GAT4	P40569	121 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	YIR035C	P40579	254 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	TPN1	P53099	579 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	YIP3	P53633	176 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	SGF11	Q03067	99 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	SDH7	Q04401	133 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	PHO92	Q06390	306 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	YPR063C	Q12160	140 aa		4.27	□□□□□ -1.73
SHP1	YBL058W	RPN13	O13563	156 aa		4.26	□□□□□ -1.73
SHP1	YBL058W	PIS1	P06197	220 aa	Known RBP	4.26	□□□□□ -1.73
SHP1	YBL058W	CDC7	P06243	507 aa		4.26	□□□□□ -1.73
SHP1	YBL058W	SEC22	P22214	214 aa		4.26	□□□□□ -1.73
SHP1	YBL058W	RPL13B	P40212	199 aa	Known RBP	4.26	□□□□□ -1.73
SHP1	YBL058W	IMP2	P46972	177 aa		4.26	□□□□□ -1.73
SHP1	YBL058W	SNX4	P47057	423 aa		4.26	□□□□□ -1.73
SHP1	YBL058W	YPL264C	Q08980	353 aa		4.26	□□□□□ -1.73
SHP1	YBL058W	AIM45	Q12480	344 aa	Known RBP	4.26	□□□□□ -1.73
SHP1	YBL058W	RPL13A	Q12690	199 aa	Predicted RBP	4.26	□□□□□ -1.73
SHP1	YBL058W	COA2	Q3E823	68 aa		4.26	□□□□□ -1.73
SHP1	YBL058W	YMR316C-A	I2HB70	103 aa		4.25	□□□□□ -1.73
SHP1	YBL058W	SUA5	P32579	426 aa		4.25	□□□□□ -1.73
SHP1	YBL058W	MIG3	P39943	394 aa		4.25	□□□□□ -1.73
SHP1	YBL058W	YER135C	P40082	130 aa		4.25	□□□□□ -1.73
SHP1	YBL058W	RPR2	P40571	144 aa		4.25	□□□□□ -1.73
SHP1	YBL058W	YJR015W	P47090	510 aa		4.25	□□□□□ -1.73
SHP1	YBL058W	MRPS8	Q03799	155 aa		4.25	□□□□□ -1.73
SHP1	YBL058W	RPS25B	P0C0T4	108 aa	Known RBP	4.24	□□□□□ -1.73
SHP1	YBL058W	YCR001W	P25347	104 aa		4.24	□□□□□ -1.73
SHP1	YBL058W	PPQ1	P32945	549 aa		4.24	□□□□□ -1.73
SHP1	YBL058W	HST4	P53688	370 aa		4.24	□□□□□ -1.73
SHP1	YBL058W	YIF1	P53845	314 aa	Known RBP	4.24	□□□□□ -1.73
SHP1	YBL058W	UBC7	Q02159	165 aa		4.24	□□□□□ -1.73
SHP1	YBL058W	LOA1	Q06508	300 aa		4.24	□□□□□ -1.73
SHP1	YBL058W	YOL160W	Q08321	113 aa		4.24	□□□□□ -1.73
SHP1	YBL058W	RPS25A	Q3E792	108 aa	Predicted RBP	4.24	□□□□□ -1.73
SHP1	YBL058W	TFB5	Q3E7C1	72 aa	Predicted RBP	4.24	□□□□□ -1.73
SHP1	YBL058W	SPS2	P08459	502 aa		4.23	□□□□□ -1.73
SHP1	YBL058W	NHP6B	P11633	99 aa	Known RBP	4.23	□□□□□ -1.73
SHP1	YBL058W	YPC1	P38298	316 aa		4.23	□□□□□ -1.73
SHP1	YBL058W	PDR17	P53844	350 aa		4.23	□□□□□ -1.73
SHP1	YBL058W	YMR090W	Q04304	227 aa	Known RBP	4.23	□□□□□ -1.73
SHP1	YBL058W	AYT1	Q12226	474 aa		4.23	□□□□□ -1.73
SHP1	YBL058W	ARG80	P07249	177 aa		4.22	□□□□□ -1.73
SHP1	YBL058W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
SHP1	YBL058W	RPL2A	P0CX45	254 aa	Known RBP	4.22	□□□□□ -1.73
SHP1	YBL058W	RPL2B	P0CX46	254 aa	Known RBP	4.22	□□□□□ -1.73
SHP1	YBL058W	RPS11A	P0CX47	156 aa	Known RBP	4.22	□□□□□ -1.73
SHP1	YBL058W	RPS11B	P0CX48	156 aa	Known RBP	4.22	□□□□□ -1.73
SHP1	YBL058W	CDC43	P18898	376 aa		4.22	□□□□□ -1.73
SHP1	YBL058W	PHD1	P36093	366 aa		4.22	□□□□□ -1.73
SHP1	YBL058W	SHB17	P36136	271 aa	Known RBP	4.22	□□□□□ -1.73
SHP1	YBL058W	ATG27	P46989	271 aa		4.22	□□□□□ -1.73
SHP1	YBL058W	AIM24	P47127	394 aa		4.22	□□□□□ -1.73
SHP1	YBL058W	MCM22	P47167	239 aa		4.22	□□□□□ -1.73
SHP1	YBL058W	YDL183C	P48569	320 aa		4.22	□□□□□ -1.73
SHP1	YBL058W	ODC1	Q03028	310 aa		4.22	□□□□□ -1.73
SHP1	YBL058W	RRT7	Q07829	113 aa		4.22	□□□□□ -1.73
SHP1	YBL058W	TIP1	P27654	210 aa	Predicted RBP	4.21	□□□□□ -1.74
SHP1	YBL058W	UTP11	P34247	250 aa	Predicted RBP	4.21	□□□□□ -1.74
SHP1	YBL058W	MRPL3	P36516	390 aa		4.21	□□□□□ -1.74
SHP1	YBL058W	LSM2	P38203	95 aa	Known RBP	4.21	□□□□□ -1.74
SHP1	YBL058W	IZH1	Q03419	316 aa		4.21	□□□□□ -1.74
SHP1	YBL058W	SCM3	Q12334	223 aa		4.21	□□□□□ -1.74
SHP1	YBL058W	SAL1	D6W196	494 aa		4.2	□□□□□ -1.74
SHP1	YBL058W	PUT1	P09368	476 aa		4.2	□□□□□ -1.74
SHP1	YBL058W	SFT2	P38166	215 aa		4.2	□□□□□ -1.74
SHP1	YBL058W	YGR269W	P40326	108 aa		4.2	□□□□□ -1.74
SHP1	YBL058W	YKE4	P40544	346 aa		4.2	□□□□□ -1.74
SHP1	YBL058W	GPI15	P53961	229 aa		4.2	□□□□□ -1.74
SHP1	YBL058W	YPR195C	Q06594	109 aa		4.2	□□□□□ -1.74
SHP1	YBL058W	ARR3	Q06598	404 aa		4.2	□□□□□ -1.74
SHP1	YBL058W	YCR025C	P25352	136 aa		4.19	□□□□□ -1.74
SHP1	YBL058W	TIR2	P33890	251 aa		4.19	□□□□□ -1.74
SHP1	YBL058W	SLM6	P38343	150 aa		4.19	□□□□□ -1.74
SHP1	YBL058W	PRE5	P40302	234 aa	Known RBP	4.19	□□□□□ -1.74
SHP1	YBL058W	SAS2	P40963	338 aa		4.19	□□□□□ -1.74
SHP1	YBL058W	MIC27	P50945	234 aa		4.19	□□□□□ -1.74
SHP1	YBL058W	FMP41	P53889	259 aa	Known RBP	4.19	□□□□□ -1.74
SHP1	YBL058W	SHH3	Q04487	196 aa		4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 23.2 ms