RNA–Protein interactions for RNA: YLR176C

RFX1, Transcript of Major transcriptional repressor of DNA-damage-regulated genes, yeast

Gene RFX1, Length 2,436 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RFX1	YLR176C	PIR1	Q03178	341 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	NOC4	Q06512	552 aa	Predicted RBP	0.46	□□□□□ -2.34
RFX1	YLR176C	YOR342C	Q12182	319 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	TAR1	Q8TGM6	124 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	RPS24A	P0CX31	135 aa	Known RBP	0.46	□□□□□ -2.34
RFX1	YLR176C	RPS24B	P0CX32	135 aa	Known RBP	0.46	□□□□□ -2.34
RFX1	YLR176C	TRX3	P25372	127 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	UBC8	P28263	218 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	NSG1	P38837	291 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	YPR203W	Q08994	102 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	ATP20	Q12233	115 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	YPR014C	Q6B0W2	109 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	MDN1	Q12019	4910 aa	Known RBP	0.45	□□□□□ -2.34
RFX1	YLR176C	JIP3	O13555	125 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	AHT1	P29589	182 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	YGL235W	P53071	178 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	PGA1	P53896	198 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	AIM34	Q03673	198 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	MAK5	P38112	773 aa	Predicted RBP	0.45	□□□□□ -2.34
RFX1	YLR176C	YBR242W	P38331	238 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	YHL037C	P38733	133 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	NSA2	P40078	261 aa	Known RBP	0.45	□□□□□ -2.34
RFX1	YLR176C	MPM1	P40364	252 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	YFL051C	P43552	160 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	DAS2	Q12084	232 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	YOR015W	Q12169	119 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	YLR412C-A	Q3E742	68 aa		0.45	□□□□□ -2.34
RFX1	YLR176C	YDL085C-A	Q3E7B7	68 aa	Known RBP	0.45	□□□□□ -2.34
RFX1	YLR176C	CAF4	P36130	643 aa		0.44	□□□□□ -2.34
RFX1	YLR176C	NRK1	P53915	240 aa		0.44	□□□□□ -2.34
RFX1	YLR176C	GAL83	Q04739	417 aa		0.44	□□□□□ -2.34
RFX1	YLR176C	UPS1	Q05776	175 aa		0.44	□□□□□ -2.34
RFX1	YLR176C	GRX8	Q05926	109 aa		0.44	□□□□□ -2.34
RFX1	YLR176C	APA2	P22108	325 aa		0.44	□□□□□ -2.34
RFX1	YLR176C	RRT1	P38192	103 aa		0.44	□□□□□ -2.34
RFX1	YLR176C	SBH2	P52871	88 aa		0.44	□□□□□ -2.34
RFX1	YLR176C	ELP6	Q04868	273 aa		0.44	□□□□□ -2.34
RFX1	YLR176C	BRX1	Q08235	291 aa	Known RBP	0.44	□□□□□ -2.34
RFX1	YLR176C	YBL010C	P32788	280 aa		0.43	□□□□□ -2.34
RFX1	YLR176C	ETR1	P38071	380 aa		0.43	□□□□□ -2.34
RFX1	YLR176C	NSE4	P43124	402 aa		0.43	□□□□□ -2.34
RFX1	YLR176C	DGK1	Q12382	290 aa		0.43	□□□□□ -2.34
RFX1	YLR176C	YLR422W	Q06409	1932 aa		0.43	□□□□□ -2.34
RFX1	YLR176C	DUR1,2	P32528	1835 aa	Known RBP	0.43	□□□□□ -2.34
RFX1	YLR176C	YHP1	Q04116	353 aa		0.43	□□□□□ -2.34
RFX1	YLR176C	FIT1	Q04433	528 aa		0.43	□□□□□ -2.34
RFX1	YLR176C	ATG41	Q12048	136 aa		0.43	□□□□□ -2.34
RFX1	YLR176C	MPD1	Q12404	318 aa	Known RBP	0.43	□□□□□ -2.34
RFX1	YLR176C	AHC2	P25649	128 aa		0.42	□□□□□ -2.34
RFX1	YLR176C	UGX2	P32772	223 aa		0.42	□□□□□ -2.34
RFX1	YLR176C	DML1	Q03652	475 aa		0.42	□□□□□ -2.34
RFX1	YLR176C	SHH4	Q06236	168 aa		0.42	□□□□□ -2.34
RFX1	YLR176C	YMR030W-A	Q3E760	96 aa		0.42	□□□□□ -2.34
RFX1	YLR176C	YKL102C	P34249	101 aa		0.42	□□□□□ -2.34
RFX1	YLR176C	CPR5	P35176	225 aa		0.41	□□□□□ -2.34
RFX1	YLR176C	SHG1	P38337	142 aa		0.41	□□□□□ -2.34
RFX1	YLR176C	YAR064W	P39563	99 aa		0.41	□□□□□ -2.34
RFX1	YLR176C	FMP32	P43557	207 aa		0.41	□□□□□ -2.34
RFX1	YLR176C	SNO1	Q03144	224 aa		0.41	□□□□□ -2.34
RFX1	YLR176C	HSP30	P25619	332 aa		0.4	□□□□□ -2.34
RFX1	YLR176C	YKR041W	P36134	250 aa		0.4	□□□□□ -2.34
RFX1	YLR176C	CCS1	P40202	249 aa	Known RBP	0.4	□□□□□ -2.34
RFX1	YLR176C	HHT1	P61830	136 aa		0.4	□□□□□ -2.34
RFX1	YLR176C	VPS28	Q02767	242 aa		0.4	□□□□□ -2.34
RFX1	YLR176C	GRX5	Q02784	150 aa		0.4	□□□□□ -2.34
RFX1	YLR176C	GPI17	Q04080	534 aa		0.4	□□□□□ -2.34
RFX1	YLR176C	RIM9	Q04734	239 aa		0.4	□□□□□ -2.34
RFX1	YLR176C	CCW12	Q12127	133 aa		0.4	□□□□□ -2.34
RFX1	YLR176C	YOR381W-A	Q3E804	55 aa		0.4	□□□□□ -2.34
RFX1	YLR176C	MAK31	P23059	88 aa		0.4	□□□□□ -2.35
RFX1	YLR176C	FYV4	P38783	130 aa	Predicted RBP	0.4	□□□□□ -2.35
RFX1	YLR176C	RFC2	P40348	353 aa		0.4	□□□□□ -2.35
RFX1	YLR176C	YIL102C	P40488	101 aa		0.4	□□□□□ -2.35
RFX1	YLR176C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	0.39	□□□□□ -2.35	not detected
RFX1	YLR176C	DCV1	P43595	202 aa		0.39	□□□□□ -2.35
RFX1	YLR176C	HOP2	P53187	214 aa		0.39	□□□□□ -2.35
RFX1	YLR176C	FMP49	A0A023PZB3	126 aa		0.39	□□□□□ -2.35
RFX1	YLR176C	NVJ1	P38881	321 aa		0.39	□□□□□ -2.35
RFX1	YLR176C	SOL1	P50278	321 aa		0.39	□□□□□ -2.35
RFX1	YLR176C	YKR005C	Q02203	525 aa		0.39	□□□□□ -2.35
RFX1	YLR176C	AVO2	Q04749	426 aa		0.39	□□□□□ -2.35
RFX1	YLR176C	SEC14	P24280	304 aa	Known RBP	0.38	□□□□□ -2.35
RFX1	YLR176C	GRX3	Q03835	250 aa		0.38	□□□□□ -2.35
RFX1	YLR176C	YOR214C	Q12282	236 aa		0.38	□□□□□ -2.35
RFX1	YLR176C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.38	□□□□□ -2.35	not detected
RFX1	YLR176C	YNL200C	P40165	246 aa	Known RBP	0.38	□□□□□ -2.35
RFX1	YLR176C	YJR015W	P47090	510 aa		0.38	□□□□□ -2.35
RFX1	YLR176C	YPR127W	Q06494	345 aa		0.38	□□□□□ -2.35
RFX1	YLR176C	GRE1	Q08969	168 aa		0.38	□□□□□ -2.35
RFX1	YLR176C	CLG1	P35190	452 aa		0.37	□□□□□ -2.35
RFX1	YLR176C	YKR070W	P36151	352 aa	Known RBP	0.37	□□□□□ -2.35
RFX1	YLR176C	MOB1	P40484	314 aa		0.37	□□□□□ -2.35
RFX1	YLR176C	TTI2	P47168	421 aa		0.37	□□□□□ -2.35
RFX1	YLR176C	HPT1	Q04178	221 aa	Known RBP	0.37	□□□□□ -2.35
RFX1	YLR176C	YET3	Q07451	203 aa		0.37	□□□□□ -2.35
RFX1	YLR176C	SHB17	P36136	271 aa	Known RBP	0.37	□□□□□ -2.35
RFX1	YLR176C	TIM13	P53299	105 aa		0.37	□□□□□ -2.35
RFX1	YLR176C	RAD6	P06104	172 aa		0.36	□□□□□ -2.35
RFX1	YLR176C	ATP7	P30902	174 aa		0.36	□□□□□ -2.35
RFX1	YLR176C	YEL073C	P39974	107 aa		0.36	□□□□□ -2.35

Retrieved 100 of 5,963 RNA–protein pairs in 40.3 ms