RNA–Protein interactions for RNA: YLR003C

CMS1, Transcript of Putative subunit of the 90S preribosome processome complex, yeast

Gene CMS1, Length 876 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CMS1	YLR003C	SHG1	P38337	142 aa		0.87	□□□□□ -2.27
CMS1	YLR003C	HPA3	P39979	161 aa		0.87	□□□□□ -2.27
CMS1	YLR003C	YFL065C	P43539	102 aa		0.87	□□□□□ -2.27
CMS1	YLR003C	ALB1	P47019	175 aa	Predicted RBP	0.87	□□□□□ -2.27
CMS1	YLR003C	SHH4	Q06236	168 aa		0.87	□□□□□ -2.27
CMS1	YLR003C	GRE1	Q08969	168 aa		0.87	□□□□□ -2.27
CMS1	YLR003C	SEN2	P16658	377 aa		0.86	□□□□□ -2.27
CMS1	YLR003C	PHO85	P17157	305 aa		0.86	□□□□□ -2.27
CMS1	YLR003C	SEC14	P24280	304 aa	Known RBP	0.86	□□□□□ -2.27
CMS1	YLR003C	FMP23	P38231	175 aa		0.86	□□□□□ -2.27
CMS1	YLR003C	PGA1	P53896	198 aa		0.86	□□□□□ -2.27
CMS1	YLR003C	MET31	Q03081	177 aa		0.86	□□□□□ -2.27
CMS1	YLR003C	GRX3	Q03835	250 aa		0.86	□□□□□ -2.27
CMS1	YLR003C	RRP17	Q04031	235 aa	Predicted RBP	0.86	□□□□□ -2.27
CMS1	YLR003C	SLH1	P53327	1967 aa	Known RBP	0.86	□□□□□ -2.27
CMS1	YLR003C	JIP3	O13555	125 aa		0.85	□□□□□ -2.27
CMS1	YLR003C	YCR023C	P25351	611 aa		0.85	□□□□□ -2.27
CMS1	YLR003C	NSA2	P40078	261 aa	Known RBP	0.85	□□□□□ -2.27
CMS1	YLR003C	SBH2	P52871	88 aa		0.85	□□□□□ -2.27
CMS1	YLR003C	YLR460C	P54007	376 aa		0.85	□□□□□ -2.27
CMS1	YLR003C	VPS28	Q02767	242 aa		0.85	□□□□□ -2.27
CMS1	YLR003C	YMR315W	Q04869	349 aa	Known RBP	0.85	□□□□□ -2.27
CMS1	YLR003C	YET3	Q07451	203 aa		0.85	□□□□□ -2.27
CMS1	YLR003C	DGK1	Q12382	290 aa		0.85	□□□□□ -2.27
CMS1	YLR003C	PEX11	Q12462	236 aa		0.85	□□□□□ -2.27
CMS1	YLR003C	YLR412C-A	Q3E742	68 aa		0.85	□□□□□ -2.27
CMS1	YLR003C	AHC2	P25649	128 aa		0.84	□□□□□ -2.27
CMS1	YLR003C	YKL102C	P34249	101 aa		0.84	□□□□□ -2.27
CMS1	YLR003C	SEC72	P39742	193 aa	Known RBP	0.84	□□□□□ -2.27
CMS1	YLR003C	FMP32	P43557	207 aa		0.84	□□□□□ -2.27
CMS1	YLR003C	GAL83	Q04739	417 aa		0.84	□□□□□ -2.27
CMS1	YLR003C	ATP20	Q12233	115 aa		0.84	□□□□□ -2.27
CMS1	YLR003C	MPD1	Q12404	318 aa	Known RBP	0.84	□□□□□ -2.27
CMS1	YLR003C	ATP7	P30902	174 aa		0.83	□□□□□ -2.28
CMS1	YLR003C	RRT1	P38192	103 aa		0.83	□□□□□ -2.28
CMS1	YLR003C	NVJ1	P38881	321 aa		0.83	□□□□□ -2.28
CMS1	YLR003C	RPL37B	P51402	88 aa	Known RBP	0.83	□□□□□ -2.28
CMS1	YLR003C	HHT1	P61830	136 aa		0.83	□□□□□ -2.28
CMS1	YLR003C	GRX5	Q02784	150 aa		0.83	□□□□□ -2.28
CMS1	YLR003C	DAS2	Q12084	232 aa		0.83	□□□□□ -2.28
CMS1	YLR003C	YOR015W	Q12169	119 aa		0.83	□□□□□ -2.28
CMS1	YLR003C	COA3	Q3E7B2	85 aa		0.83	□□□□□ -2.28
CMS1	YLR003C	HSP30	P25619	332 aa		0.82	□□□□□ -2.28
CMS1	YLR003C	TRR1	P29509	319 aa	Known RBP	0.82	□□□□□ -2.28
CMS1	YLR003C	AHT1	P29589	182 aa		0.82	□□□□□ -2.28
CMS1	YLR003C	YKR041W	P36134	250 aa		0.82	□□□□□ -2.28
CMS1	YLR003C	GPI17	Q04080	534 aa		0.82	□□□□□ -2.28
CMS1	YLR003C	UPS1	Q05776	175 aa		0.82	□□□□□ -2.28
CMS1	YLR003C	PST2	Q12335	198 aa	Known RBP	0.82	□□□□□ -2.28
CMS1	YLR003C	SRP14	P38985	146 aa		0.81	□□□□□ -2.28
CMS1	YLR003C	RFC2	P40348	353 aa		0.81	□□□□□ -2.28
CMS1	YLR003C	YGL235W	P53071	178 aa		0.81	□□□□□ -2.28
CMS1	YLR003C	TIM13	P53299	105 aa		0.81	□□□□□ -2.28
CMS1	YLR003C	HRD1	Q08109	551 aa		0.81	□□□□□ -2.28
CMS1	YLR003C	ATG41	Q12048	136 aa		0.81	□□□□□ -2.28
CMS1	YLR003C	POG1	P40473	351 aa		0.8	□□□□□ -2.28
CMS1	YLR003C	NSE4	P43124	402 aa		0.8	□□□□□ -2.28
CMS1	YLR003C	YFL051C	P43552	160 aa		0.8	□□□□□ -2.28
CMS1	YLR003C	YKR005C	Q02203	525 aa		0.8	□□□□□ -2.28
CMS1	YLR003C	YOR214C	Q12282	236 aa		0.8	□□□□□ -2.28
CMS1	YLR003C	TRM3	Q07527	1436 aa		0.8	□□□□□ -2.28
CMS1	YLR003C	CPR5	P35176	225 aa		0.79	□□□□□ -2.28
CMS1	YLR003C	SOL1	P50278	321 aa		0.79	□□□□□ -2.28
CMS1	YLR003C	DML1	Q03652	475 aa		0.79	□□□□□ -2.28
CMS1	YLR003C	HPT1	Q04178	221 aa	Known RBP	0.79	□□□□□ -2.28
CMS1	YLR003C	ELP6	Q04868	273 aa		0.79	□□□□□ -2.28
CMS1	YLR003C	ATG38	Q05789	226 aa	Known RBP	0.79	□□□□□ -2.28
CMS1	YLR003C	YMR030W-A	Q3E760	96 aa		0.79	□□□□□ -2.28
CMS1	YLR003C	TAR1	Q8TGM6	124 aa		0.79	□□□□□ -2.28
CMS1	YLR003C	RAD6	P06104	172 aa		0.78	□□□□□ -2.28
CMS1	YLR003C	YBL010C	P32788	280 aa		0.78	□□□□□ -2.28
CMS1	YLR003C	MRPL15	P36523	253 aa		0.78	□□□□□ -2.28
CMS1	YLR003C	MPM1	P40364	252 aa		0.78	□□□□□ -2.28
CMS1	YLR003C	MOB1	P40484	314 aa		0.78	□□□□□ -2.28
CMS1	YLR003C	JAC1	P53193	184 aa		0.78	□□□□□ -2.28
CMS1	YLR003C	YIP3	P53633	176 aa		0.78	□□□□□ -2.28
CMS1	YLR003C	YHP1	Q04116	353 aa		0.78	□□□□□ -2.28
CMS1	YLR003C	YDR391C	Q04170	232 aa		0.78	□□□□□ -2.28
CMS1	YLR003C	RIM9	Q04734	239 aa		0.78	□□□□□ -2.28
CMS1	YLR003C	CLG1	P35190	452 aa		0.77	□□□□□ -2.29
CMS1	YLR003C	MAK5	P38112	773 aa	Predicted RBP	0.77	□□□□□ -2.29
CMS1	YLR003C	FYV4	P38783	130 aa	Predicted RBP	0.77	□□□□□ -2.29
CMS1	YLR003C	FIT1	Q04433	528 aa		0.77	□□□□□ -2.29
CMS1	YLR003C	YPR127W	Q06494	345 aa		0.77	□□□□□ -2.29
CMS1	YLR003C	CHD1	P32657	1468 aa		0.77	□□□□□ -2.29
CMS1	YLR003C	RIF1	P29539	1916 aa		0.77	□□□□□ -2.29
CMS1	YLR003C	SAC3	P46674	1301 aa		0.76	□□□□□ -2.29
CMS1	YLR003C	UBC8	P28263	218 aa		0.76	□□□□□ -2.29
CMS1	YLR003C	ETR1	P38071	380 aa		0.76	□□□□□ -2.29
CMS1	YLR003C	TTI2	P47168	421 aa		0.76	□□□□□ -2.29
CMS1	YLR003C	PLP1	Q04004	230 aa		0.76	□□□□□ -2.29
CMS1	YLR003C	YDL157C	Q12082	118 aa		0.76	□□□□□ -2.29
CMS1	YLR003C	PTC1	P35182	281 aa		0.75	□□□□□ -2.29
CMS1	YLR003C	YHL037C	P38733	133 aa		0.75	□□□□□ -2.29
CMS1	YLR003C	YAR064W	P39563	99 aa		0.75	□□□□□ -2.29
CMS1	YLR003C	CCS1	P40202	249 aa	Known RBP	0.75	□□□□□ -2.29
CMS1	YLR003C	GLR1	P41921	483 aa	Known RBP	0.75	□□□□□ -2.29
CMS1	YLR003C	AIM36	Q03798	255 aa		0.75	□□□□□ -2.29
CMS1	YLR003C	YOR381W-A	Q3E804	55 aa		0.75	□□□□□ -2.29
CMS1	YLR003C	CMD1	P06787	147 aa	Known RBP	0.74	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 64.9 ms