RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	ATP5	P09457	212 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	NHP6A	P11632	93 aa	Known RBP	0.97	□□□□□ -2.25
VPS55	YJR044C	SUA7	P29055	345 aa	Predicted RBP	0.97	□□□□□ -2.25
VPS55	YJR044C	PEX4	P29340	183 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.97	□□□□□ -2.25	not detected
VPS55	YJR044C	PAM17	P36147	197 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	YBR220C	P38318	560 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	CTR2	P38865	189 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	YER084W	P40057	128 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	NSA2	P40078	261 aa	Known RBP	0.97	□□□□□ -2.25
VPS55	YJR044C	YNL217W	P40152	326 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	YPL073C	P40323	161 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	AGE2	P40529	298 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	TIR3	P40552	269 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	PHB1	P40961	287 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	YFR054C	P43622	192 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	CCC1	P47818	322 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	RBL2	P48606	106 aa	Known RBP	0.97	□□□□□ -2.25
VPS55	YJR044C	RPL26B	P53221	127 aa	Known RBP	0.97	□□□□□ -2.25
VPS55	YJR044C	YDR366C	P87287	132 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	PIR1	Q03178	341 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	CUE4	Q04201	117 aa	Predicted RBP	0.97	□□□□□ -2.25
VPS55	YJR044C	YMR253C	Q04835	414 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	FCY1	Q12178	158 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	PST2	Q12335	198 aa	Known RBP	0.97	□□□□□ -2.25
VPS55	YJR044C	UBR1	P19812	1950 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	YLR422W	Q06409	1932 aa		0.97	□□□□□ -2.25
VPS55	YJR044C	DUR1,2	P32528	1835 aa	Known RBP	0.96	□□□□□ -2.26
VPS55	YJR044C	RAS2	P01120	322 aa	Known RBP	0.96	□□□□□ -2.26
VPS55	YJR044C	TIR1	P10863	254 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	SRP21	P32342	167 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	FZF1	P32805	299 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	PHO88	P38264	188 aa	Predicted RBP	0.96	□□□□□ -2.26
VPS55	YJR044C	CSH1	P38287	376 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	YBR209W	P38311	105 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	HTD2	P38790	280 aa	Known RBP	0.96	□□□□□ -2.26
VPS55	YJR044C	YHR180W	P38868	163 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	SPC25	P40014	221 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	GPI2	P46961	280 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	SOL1	P50278	321 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	CAB4	P53332	305 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	YNR062C	P53748	327 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	YNR077C	P53758	84 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	UBC7	Q02159	165 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	MIX17	Q03667	156 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	UPS3	Q04006	179 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	YPR174C	Q06616	221 aa	Predicted RBP	0.96	□□□□□ -2.26
VPS55	YJR044C	RRT7	Q07829	113 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	0.96	□□□□□ -2.26	not detected
VPS55	YJR044C	IRC23	Q08416	157 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	UIP4	Q08926	304 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	SLO1	Q3E784	85 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	ATG40	Q99325	256 aa		0.96	□□□□□ -2.26
VPS55	YJR044C	FAS1	P07149	2051 aa	Known RBP	0.95	□□□□□ -2.26
VPS55	YJR044C	RPC19	P28000	142 aa	Known RBP	0.95	□□□□□ -2.26
VPS55	YJR044C	TFC1	P32367	649 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	AGA2	P32781	87 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	GSP2	P32836	220 aa	Known RBP	0.95	□□□□□ -2.26
VPS55	YJR044C	SUI1	P32911	108 aa	Known RBP	0.95	□□□□□ -2.26
VPS55	YJR044C	SFK1	P35735	353 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	FMP23	P38231	175 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	YEL028W	P39989	153 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	MOB1	P40484	314 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	SMD3	P43321	101 aa	Known RBP	0.95	□□□□□ -2.26
VPS55	YJR044C	YJL144W	P47009	104 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	ORM1	P53224	222 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	YGR039W	P53225	103 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	LIP1	Q03579	150 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	CSN9	Q03981	162 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	GAL83	Q04739	417 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	SYM1	Q06563	197 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	RFU1	Q08003	200 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	FYV12	Q08559	129 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	RAD28	Q12021	506 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	FSF1	Q12029	327 aa	Known RBP	0.95	□□□□□ -2.26
VPS55	YJR044C	SPC3	Q12133	184 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	EMC6	Q12431	108 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	YLR361C-A	Q3E795	98 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	RIB3	Q99258	208 aa		0.95	□□□□□ -2.26
VPS55	YJR044C	YLR236C	A0A023PZG4	107 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	GPA2	P10823	449 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	UBC8	P28263	218 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	PRS3	P38689	320 aa	Known RBP	0.94	□□□□□ -2.26
VPS55	YJR044C	YHR022C	P38763	256 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	FIP1	P45976	327 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	YJR146W	P47174	117 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	SPG1	P50088	95 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	DOC1	P53068	250 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	YNL033W	P53964	284 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	ATP19	P81451	68 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	CYT2	Q00873	224 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	DYN2	Q02647	92 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	COF1	Q03048	143 aa	Known RBP	0.94	□□□□□ -2.26
VPS55	YJR044C	CGI121	Q03705	181 aa	Known RBP	0.94	□□□□□ -2.26
VPS55	YJR044C	SDH7	Q04401	133 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	NAT3	Q06504	195 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	YPR013C	Q12145	317 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	ATP14	Q12349	124 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	BOL1	Q3E793	110 aa		0.94	□□□□□ -2.26
VPS55	YJR044C	MSB2	P32334	1306 aa		0.93	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 39.3 ms