RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YGL235WP53071 178 aa1.89□□□□□ -2.11
UPF3YGR072W VPS28Q02767 242 aa1.89□□□□□ -2.11
UPF3YGR072W YPR127WQ06494 345 aa1.89□□□□□ -2.11
UPF3YGR072W YHR007C-AQ07074 71 aa1.89□□□□□ -2.11
UPF3YGR072W YOR214CQ12282 236 aa1.89□□□□□ -2.11
UPF3YGR072W STP22P25604 385 aa1.88□□□□□ -2.11
UPF3YGR072W FIG1P38224 298 aa1.88□□□□□ -2.11
UPF3YGR072W YBR219CP38317 127 aa1.88□□□□□ -2.11
UPF3YGR072W EDC3P39998 551 aaKnown RBP1.88□□□□□ -2.11
UPF3YGR072W GLR1P41921 483 aaKnown RBP1.88□□□□□ -2.11
UPF3YGR072W DIG2Q03373 323 aaKnown RBP1.88□□□□□ -2.11
UPF3YGR072W YPR013CQ12145 317 aa1.88□□□□□ -2.11
UPF3YGR072W HSP30P25619 332 aa1.87□□□□□ -2.11
UPF3YGR072W UBC6P33296 250 aaPredicted RBP1.87□□□□□ -2.11
UPF3YGR072W SFK1P35735 353 aa1.87□□□□□ -2.11
UPF3YGR072W DER1P38307 211 aa1.87□□□□□ -2.11
UPF3YGR072W YPL073CP40323 161 aa1.87□□□□□ -2.11
UPF3YGR072W YGL101WP53144 215 aa1.87□□□□□ -2.11
UPF3YGR072W YNL033WP53964 284 aa1.87□□□□□ -2.11
UPF3YGR072W HSK3P69852 69 aa1.87□□□□□ -2.11
UPF3YGR072W PRP11Q07350 266 aaPredicted RBP1.87□□□□□ -2.11
UPF3YGR072W DAS2Q12084 232 aa1.87□□□□□ -2.11
UPF3YGR072W NSL1Q12143 216 aa1.87□□□□□ -2.11
UPF3YGR072W PBI2P0CT04 75 aaKnown RBP1.86□□□□□ -2.11
UPF3YGR072W VMA22P38784 181 aa1.86□□□□□ -2.11
UPF3YGR072W SBH2P52871 88 aa1.86□□□□□ -2.11
UPF3YGR072W GAL83Q04739 417 aa1.86□□□□□ -2.11
UPF3YGR072W ATP20Q12233 115 aa1.86□□□□□ -2.11
UPF3YGR072W RAD6P06104 172 aa1.85□□□□□ -2.11
UPF3YGR072W PHO85P17157 305 aa1.85□□□□□ -2.11
UPF3YGR072W BUB2P26448 306 aaPredicted RBP1.85□□□□□ -2.11
UPF3YGR072W GSP2P32836 220 aaKnown RBP1.85□□□□□ -2.11
UPF3YGR072W BAT2P47176 376 aaKnown RBP1.85□□□□□ -2.11
UPF3YGR072W DAD4P69851 72 aa1.85□□□□□ -2.11
UPF3YGR072W YKR005CQ02203 525 aa1.85□□□□□ -2.11
UPF3YGR072W THI74Q04083 370 aa1.85□□□□□ -2.11
UPF3YGR072W FYV12Q08559 129 aa1.85□□□□□ -2.11
UPF3YGR072W YOR015WQ12169 119 aa1.85□□□□□ -2.11
UPF3YGR072W YOL162WP0CF19 215 aa1.84□□□□□ -2.11
UPF3YGR072W RRT1P38192 103 aa1.84□□□□□ -2.11
UPF3YGR072W YER135CP40082 130 aa1.84□□□□□ -2.11
UPF3YGR072W RIO2P40160 425 aaKnown RBP1.84□□□□□ -2.11
UPF3YGR072W YNL200CP40165 246 aaKnown RBP1.84□□□□□ -2.11
UPF3YGR072W RPL13BP40212 199 aaKnown RBP1.84□□□□□ -2.11
UPF3YGR072W SOL1P50278 321 aa1.84□□□□□ -2.11
UPF3YGR072W PIR1Q03178 341 aa1.84□□□□□ -2.11
UPF3YGR072W YLR162WQ06235 118 aa1.84□□□□□ -2.11
UPF3YGR072W CSI2Q08054 341 aa1.84□□□□□ -2.11
UPF3YGR072W RPL13AQ12690 199 aaPredicted RBP1.84□□□□□ -2.11
UPF3YGR072W EFG1Q3E705 233 aaKnown RBP1.84□□□□□ -2.11
UPF3YGR072W MDM35O60200 86 aa1.83□□□□□ -2.12
UPF3YGR072W GPA2P10823 449 aa1.83□□□□□ -2.12
UPF3YGR072W YCR023CP25351 611 aa1.83□□□□□ -2.12
UPF3YGR072W YBR220CP38318 560 aa1.83□□□□□ -2.12
UPF3YGR072W TRM3Q07527 1436 aa1.83□□□□□ -2.12
UPF3YGR072W QCR8P08525 94 aa1.82□□□□□ -2.12
UPF3YGR072W YGL010WP25338 174 aa1.82□□□□□ -2.12
UPF3YGR072W YKR045CP36138 183 aa1.82□□□□□ -2.12
UPF3YGR072W CSH1P38287 376 aa1.82□□□□□ -2.12
UPF3YGR072W FYV4P38783 130 aaPredicted RBP1.82□□□□□ -2.12
UPF3YGR072W LSM3P57743 89 aaKnown RBP1.82□□□□□ -2.12
UPF3YGR072W RCE1Q03530 315 aa1.82□□□□□ -2.12
UPF3YGR072W RNH202Q05635 350 aa1.82□□□□□ -2.12
UPF3YGR072W COX8P04039 78 aa1.81□□□□□ -2.12
UPF3YGR072W UBI4P0CG63 381 aaKnown RBP1.81□□□□□ -2.12
UPF3YGR072W PEX34P25584 144 aa1.81□□□□□ -2.12
UPF3YGR072W YHL018WP38744 120 aaPredicted RBP1.81□□□□□ -2.12
UPF3YGR072W DLS1P40366 167 aa1.81□□□□□ -2.12
UPF3YGR072W ALB1P47019 175 aaPredicted RBP1.81□□□□□ -2.12
UPF3YGR072W THG1P53215 237 aaKnown RBP1.81□□□□□ -2.12
UPF3YGR072W HHT1P61830 136 aa1.81□□□□□ -2.12
UPF3YGR072W YLR046CQ12253 270 aa1.81□□□□□ -2.12
UPF3YGR072W PET20Q99373 253 aa1.81□□□□□ -2.12
UPF3YGR072W CPR5P35176 225 aa1.8□□□□□ -2.12
UPF3YGR072W UPS2P35200 230 aa1.8□□□□□ -2.12
UPF3YGR072W YRA2P36036 203 aaKnown RBP RIP-Chip data1.8□□□□□ -2.12not detected
UPF3YGR072W SRP102P36057 244 aaPredicted RBP1.8□□□□□ -2.12
UPF3YGR072W APQ12P40532 138 aa1.8□□□□□ -2.12
UPF3YGR072W DML1Q03652 475 aa1.8□□□□□ -2.12
UPF3YGR072W YDR391CQ04170 232 aa1.8□□□□□ -2.12
UPF3YGR072W SYM1Q06563 197 aa1.8□□□□□ -2.12
UPF3YGR072W HRD1Q08109 551 aa1.8□□□□□ -2.12
UPF3YGR072W ATP5P09457 212 aa1.79□□□□□ -2.12
UPF3YGR072W FPR1P20081 114 aaKnown RBP1.79□□□□□ -2.12
UPF3YGR072W PTC1P35182 281 aa1.79□□□□□ -2.12
UPF3YGR072W YEL073CP39974 107 aa1.79□□□□□ -2.12
UPF3YGR072W FLX1P40464 311 aa1.79□□□□□ -2.12
UPF3YGR072W UPS3Q04006 179 aa1.79□□□□□ -2.12
UPF3YGR072W RRP17Q04031 235 aaPredicted RBP1.79□□□□□ -2.12
UPF3YGR072W YPD1Q07688 167 aa1.79□□□□□ -2.12
UPF3YGR072W MSB2P32334 1306 aa1.78□□□□□ -2.12
UPF3YGR072W RPL2AP0CX45 254 aaKnown RBP1.78□□□□□ -2.12
UPF3YGR072W RPL2BP0CX46 254 aaKnown RBP1.78□□□□□ -2.12
UPF3YGR072W RPL30P14120 105 aaKnown RBP1.78□□□□□ -2.12
UPF3YGR072W SLM6P38343 150 aa1.78□□□□□ -2.12
UPF3YGR072W HPA3P39979 161 aa1.78□□□□□ -2.12
UPF3YGR072W YEL028WP39989 153 aa1.78□□□□□ -2.12
UPF3YGR072W NQM1P53228 333 aaPredicted RBP1.78□□□□□ -2.12
UPF3YGR072W CWC27Q02770 301 aa1.78□□□□□ -2.12
UPF3YGR072W MZM1Q03429 123 aaPredicted RBP1.78□□□□□ -2.12
Retrieved 100 of 5,963 RNA–protein pairs in 24.4 ms