RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C SHH3Q04487 196 aa2.85□□□□□ -1.95
NPL4YBR170C GAL83Q04739 417 aa2.85□□□□□ -1.95
NPL4YBR170C MEU1Q07938 337 aaKnown RBP RIP-Chip data2.85□□□□□ -1.95not detected
NPL4YBR170C ATG40Q99325 256 aa2.85□□□□□ -1.95
NPL4YBR170C SCL1P21243 252 aaKnown RBP2.85□□□□□ -1.95
NPL4YBR170C NSA2P40078 261 aaKnown RBP2.85□□□□□ -1.95
NPL4YBR170C YNL217WP40152 326 aa2.85□□□□□ -1.95
NPL4YBR170C CUP9P41817 306 aa2.85□□□□□ -1.95
NPL4YBR170C SBH1P52870 82 aa2.85□□□□□ -1.95
NPL4YBR170C TIM13P53299 105 aa2.85□□□□□ -1.95
NPL4YBR170C RAV2Q03956 351 aa2.85□□□□□ -1.95
NPL4YBR170C HRT1Q08273 121 aa2.85□□□□□ -1.95
NPL4YBR170C ATP20Q12233 115 aa2.85□□□□□ -1.95
NPL4YBR170C STP22P25604 385 aa2.84□□□□□ -1.96
NPL4YBR170C FZF1P32805 299 aa2.84□□□□□ -1.96
NPL4YBR170C GIM4P40005 111 aaKnown RBP2.84□□□□□ -1.96
NPL4YBR170C YFR054CP43622 192 aa2.84□□□□□ -1.96
NPL4YBR170C MIX17Q03667 156 aa2.84□□□□□ -1.96
NPL4YBR170C YMR253CQ04835 414 aa2.84□□□□□ -1.96
NPL4YBR170C CYC2P38909 366 aa2.83□□□□□ -1.96
NPL4YBR170C YGR042WP53227 271 aa2.83□□□□□ -1.96
NPL4YBR170C DAD3P69850 94 aa2.83□□□□□ -1.96
NPL4YBR170C ATP5P09457 212 aa2.82□□□□□ -1.96
NPL4YBR170C PAM17P36147 197 aa2.82□□□□□ -1.96
NPL4YBR170C YBR220CP38318 560 aa2.82□□□□□ -1.96
NPL4YBR170C SVP26P38869 228 aa2.82□□□□□ -1.96
NPL4YBR170C GLR1P41921 483 aaKnown RBP2.82□□□□□ -1.96
NPL4YBR170C YGR201CP42936 225 aa2.82□□□□□ -1.96
NPL4YBR170C YJR015WP47090 510 aa2.82□□□□□ -1.96
NPL4YBR170C YKR005CQ02203 525 aa2.82□□□□□ -1.96
NPL4YBR170C YLR236CA0A023PZG4 107 aa2.82□□□□□ -1.96
NPL4YBR170C TVP23P38962 199 aa2.82□□□□□ -1.96
NPL4YBR170C FIP1P45976 327 aa2.82□□□□□ -1.96
NPL4YBR170C YGL204CP53089 101 aa2.82□□□□□ -1.96
NPL4YBR170C VPS28Q02767 242 aa2.82□□□□□ -1.96
NPL4YBR170C IRC23Q08416 157 aa2.82□□□□□ -1.96
NPL4YBR170C RAS2P01120 322 aaKnown RBP2.81□□□□□ -1.96
NPL4YBR170C PHO85P17157 305 aa2.81□□□□□ -1.96
NPL4YBR170C HSP30P25619 332 aa2.81□□□□□ -1.96
NPL4YBR170C RBL2P48606 106 aaKnown RBP2.81□□□□□ -1.96
NPL4YBR170C YMR320WQ04897 101 aa2.81□□□□□ -1.96
NPL4YBR170C RRT1P38192 103 aa2.8□□□□□ -1.96
NPL4YBR170C YBR209WP38311 105 aa2.8□□□□□ -1.96
NPL4YBR170C YHR022CP38763 256 aa2.8□□□□□ -1.96
NPL4YBR170C YNL033WP53964 284 aa2.8□□□□□ -1.96
NPL4YBR170C YPL073CP40323 161 aa2.79□□□□□ -1.96
NPL4YBR170C AGE2P40529 298 aa2.79□□□□□ -1.96
NPL4YBR170C CYT2Q00873 224 aa2.79□□□□□ -1.96
NPL4YBR170C DDI2P0CH63 225 aa2.79□□□□□ -1.96
NPL4YBR170C DDI3P0CH64 225 aa2.79□□□□□ -1.96
NPL4YBR170C VMA22P38784 181 aa2.79□□□□□ -1.96
NPL4YBR170C GAA1P39012 614 aa2.79□□□□□ -1.96
NPL4YBR170C CCC1P47818 322 aa2.79□□□□□ -1.96
NPL4YBR170C ERG25P53045 309 aa2.79□□□□□ -1.96
NPL4YBR170C RAD6P06104 172 aa2.78□□□□□ -1.96
NPL4YBR170C YEL028WP39989 153 aa2.78□□□□□ -1.96
NPL4YBR170C CUE4Q04201 117 aaPredicted RBP2.78□□□□□ -1.96
NPL4YBR170C SYM1Q06563 197 aa2.78□□□□□ -1.96
NPL4YBR170C YER181CP40097 107 aa2.77□□□□□ -1.97
NPL4YBR170C CGI121Q03705 181 aaKnown RBP2.77□□□□□ -1.97
NPL4YBR170C CSN9Q03981 162 aa2.77□□□□□ -1.97
NPL4YBR170C RAD28Q12021 506 aa2.77□□□□□ -1.97
NPL4YBR170C RIB3Q99258 208 aa2.77□□□□□ -1.97
NPL4YBR170C TAF2P23255 1407 aa2.77□□□□□ -1.97
NPL4YBR170C FAS1P07149 2051 aaKnown RBP2.77□□□□□ -1.97
NPL4YBR170C UTR5P32630 166 aa2.76□□□□□ -1.97
NPL4YBR170C PTC1P35182 281 aa2.76□□□□□ -1.97
NPL4YBR170C POP3P53833 195 aaPredicted RBP2.76□□□□□ -1.97
NPL4YBR170C RNH202Q05635 350 aa2.76□□□□□ -1.97
NPL4YBR170C TRM3Q07527 1436 aa2.76□□□□□ -1.97
NPL4YBR170C HRD1Q08109 551 aa2.76□□□□□ -1.97
NPL4YBR170C HTD2P38790 280 aaKnown RBP2.76□□□□□ -1.97
NPL4YBR170C KNH1P50112 268 aa2.76□□□□□ -1.97
NPL4YBR170C YGL193CP53097 103 aa2.76□□□□□ -1.97
NPL4YBR170C YPD1Q07688 167 aa2.76□□□□□ -1.97
NPL4YBR170C YOR381W-AQ3E804 55 aa2.76□□□□□ -1.97
NPL4YBR170C SEC11P15367 167 aa2.75□□□□□ -1.97
NPL4YBR170C RIO2P40160 425 aaKnown RBP2.75□□□□□ -1.97
NPL4YBR170C YDR102CQ03864 110 aa2.75□□□□□ -1.97
NPL4YBR170C PST2Q12335 198 aaKnown RBP2.75□□□□□ -1.97
NPL4YBR170C YER135CP40082 130 aa2.74□□□□□ -1.97
NPL4YBR170C DAN1P47178 298 aa2.74□□□□□ -1.97
NPL4YBR170C YPR013CQ12145 317 aa2.74□□□□□ -1.97
NPL4YBR170C YLR422WQ06409 1932 aa2.74□□□□□ -1.97
NPL4YBR170C MET5P47169 1442 aa2.74□□□□□ -1.97
NPL4YBR170C DUR1,2P32528 1835 aaKnown RBP2.74□□□□□ -1.97
NPL4YBR170C SPT14P32363 452 aa2.73□□□□□ -1.97
NPL4YBR170C TFC1P32367 649 aa2.73□□□□□ -1.97
NPL4YBR170C DSE2P38844 325 aa2.73□□□□□ -1.97
NPL4YBR170C YEL073CP39974 107 aa2.73□□□□□ -1.97
NPL4YBR170C YJL218WP40892 196 aaKnown RBP2.73□□□□□ -1.97
NPL4YBR170C SAY1P53324 424 aa2.73□□□□□ -1.97
NPL4YBR170C COF1Q03048 143 aaKnown RBP2.73□□□□□ -1.97
NPL4YBR170C SML1Q04964 104 aa2.73□□□□□ -1.97
NPL4YBR170C YLR361C-AQ3E795 98 aa2.73□□□□□ -1.97
NPL4YBR170C YDR391CQ04170 232 aa2.73□□□□□ -1.97
NPL4YBR170C RIM9Q04734 239 aa2.73□□□□□ -1.97
NPL4YBR170C PHO13P19881 312 aa2.72□□□□□ -1.97
NPL4YBR170C MRPL24P36525 258 aaPredicted RBP2.72□□□□□ -1.97
NPL4YBR170C PHB1P40961 287 aa2.72□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 98.1 ms