RNA–Protein interactions for RNA: YMR022W

UBC7, Transcript of Ubiquitin conjugating enzyme, yeast

Gene UBC7, Length 498 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC7	YMR022W	YLR036C	Q07986	203 aa		0.5	□□□□□ -2.33
UBC7	YMR022W	YOL107W	Q12239	342 aa		0.5	□□□□□ -2.33
UBC7	YMR022W	NSP1	P14907	823 aa	Known RBP	0.49	□□□□□ -2.33
UBC7	YMR022W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.49	□□□□□ -2.33	not detected
UBC7	YMR022W	YEL067C	P39978	195 aa		0.49	□□□□□ -2.33
UBC7	YMR022W	CAT5	P41735	233 aa		0.49	□□□□□ -2.33
UBC7	YMR022W	CUS2	P53830	285 aa	Predicted RBP	0.49	□□□□□ -2.33
UBC7	YMR022W	YHR139C-A	O13536	103 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	COX2	P00410	251 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	CDC36	P06100	191 aa	Predicted RBP	0.48	□□□□□ -2.33
UBC7	YMR022W	RPT5	P33297	434 aa	Known RBP	0.48	□□□□□ -2.33
UBC7	YMR022W	RIB7	P33312	244 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	YBR209W	P38311	105 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	0.48	□□□□□ -2.33	not detected
UBC7	YMR022W	YIL086C	P40503	102 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	CUP9	P41817	306 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	BNA6	P43619	295 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	RPA43	P46669	326 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	EMC4	P53073	190 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	RCE1	Q03530	315 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	FMN1	Q03778	218 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	MDM32	Q12171	622 aa		0.48	□□□□□ -2.33
UBC7	YMR022W	EHD3	P28817	500 aa		0.47	□□□□□ -2.33
UBC7	YMR022W	SNC2	P33328	115 aa		0.47	□□□□□ -2.33
UBC7	YMR022W	YUH1	P35127	236 aa		0.47	□□□□□ -2.33
UBC7	YMR022W	PRS3	P38689	320 aa	Known RBP	0.47	□□□□□ -2.33
UBC7	YMR022W	EDC3	P39998	551 aa	Known RBP	0.47	□□□□□ -2.33
UBC7	YMR022W	NSA1	P53136	463 aa	Predicted RBP	0.47	□□□□□ -2.33
UBC7	YMR022W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	0.47	□□□□□ -2.33	not detected
UBC7	YMR022W	YNL046W	P53956	172 aa		0.47	□□□□□ -2.33
UBC7	YMR022W	RIM9	Q04734	239 aa		0.47	□□□□□ -2.33
UBC7	YMR022W	MED4	Q12343	284 aa		0.47	□□□□□ -2.33
UBC7	YMR022W	YPR170W-B	P0C5R9	85 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	PBN1	P25580	416 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	AUA1	P32450	94 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	SRB4	P32569	687 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	MSN4	P33749	630 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	FIG1	P38224	298 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	CUE1	P38428	203 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	COX15	P40086	486 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	YIR020C	P40575	100 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	GLG2	P47011	380 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	SNZ1	Q03148	297 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	YDR248C	Q03786	193 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	SEI1	Q06058	285 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	YLR173W	Q06247	608 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	PAM18	Q07914	168 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	SDO1	Q07953	250 aa	Known RBP	0.46	□□□□□ -2.34
UBC7	YMR022W	UIP4	Q08926	304 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	CSM4	Q08955	156 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	MSH5	Q12175	901 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	YOR029W	Q12243	111 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	YLR126C	Q12288	251 aa		0.46	□□□□□ -2.34
UBC7	YMR022W	TCP1	P12612	559 aa	Known RBP	0.45	□□□□□ -2.34
UBC7	YMR022W	ERD2	P18414	219 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	RPO26	P20435	155 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	MRPL25	P23369	157 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	RIB1	P38066	345 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	UMP1	P38293	148 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	TRS20	P38334	175 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	YHL037C	P38733	133 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	YAR1	P46683	200 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	SBH2	P52871	88 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	PET117	Q02771	107 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	PIR1	Q03178	341 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	KAP95	Q06142	861 aa	Known RBP	0.45	□□□□□ -2.34
UBC7	YMR022W	YPR202W	Q08993	238 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	YLR046C	Q12253	270 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	PSF1	Q12488	208 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	LSO2	Q3E772	92 aa	Known RBP	0.45	□□□□□ -2.34
UBC7	YMR022W	YOR032W-A	Q8TGS1	66 aa		0.45	□□□□□ -2.34
UBC7	YMR022W	ATG22	P25568	528 aa		0.44	□□□□□ -2.34
UBC7	YMR022W	YCR016W	P25617	290 aa	Known RBP	0.44	□□□□□ -2.34
UBC7	YMR022W	SKG1	P36169	355 aa		0.44	□□□□□ -2.34
UBC7	YMR022W	MRPL28	P36527	147 aa		0.44	□□□□□ -2.34
UBC7	YMR022W	YBR096W	P38256	230 aa		0.44	□□□□□ -2.34
UBC7	YMR022W	YRB2	P40517	327 aa		0.44	□□□□□ -2.34
UBC7	YMR022W	LIA1	P47120	325 aa	Known RBP	0.44	□□□□□ -2.34
UBC7	YMR022W	RAD17	P48581	401 aa		0.44	□□□□□ -2.34
UBC7	YMR022W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	0.44	□□□□□ -2.34	not detected
UBC7	YMR022W	KRE28	Q04431	385 aa		0.44	□□□□□ -2.34
UBC7	YMR022W	YHR007C-A	Q07074	71 aa		0.44	□□□□□ -2.34
UBC7	YMR022W	RRT8	Q08219	342 aa		0.44	□□□□□ -2.34
UBC7	YMR022W	RTR2	Q12378	196 aa		0.44	□□□□□ -2.34
UBC7	YMR022W	MAK31	P23059	88 aa		0.43	□□□□□ -2.34
UBC7	YMR022W	CDC10	P25342	322 aa	Known RBP	0.43	□□□□□ -2.34
UBC7	YMR022W	STP22	P25604	385 aa		0.43	□□□□□ -2.34
UBC7	YMR022W	RPS5	P26783	225 aa	Known RBP	0.43	□□□□□ -2.34
UBC7	YMR022W	SSO1	P32867	290 aa		0.43	□□□□□ -2.34
UBC7	YMR022W	LDB7	P38210	180 aa		0.43	□□□□□ -2.34
UBC7	YMR022W	DOG2	P38773	246 aa		0.43	□□□□□ -2.34
UBC7	YMR022W	AST2	P39945	430 aa	Known RBP	0.43	□□□□□ -2.34
UBC7	YMR022W	FMC1	P40491	155 aa		0.43	□□□□□ -2.34
UBC7	YMR022W	DOC1	P53068	250 aa		0.43	□□□□□ -2.34
UBC7	YMR022W	ARO8	P53090	500 aa	Known RBP	0.43	□□□□□ -2.34
UBC7	YMR022W	PRM8	P53174	237 aa		0.43	□□□□□ -2.34
UBC7	YMR022W	RRN5	Q02983	363 aa		0.43	□□□□□ -2.34
UBC7	YMR022W	SPG3	Q04398	127 aa	Predicted RBP	0.43	□□□□□ -2.34
UBC7	YMR022W	PEX11	Q12462	236 aa		0.43	□□□□□ -2.34
UBC7	YMR022W	TSC3	Q3E790	80 aa		0.43	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 46.5 ms