RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W FEN2P25621 512 aaKnown RBP3.7□□□□□ -1.82
SSH4YKL124W CTR2P38865 189 aa3.7□□□□□ -1.82
SSH4YKL124W YCH1P42937 148 aa3.7□□□□□ -1.82
SSH4YKL124W AVT4P50944 713 aa3.7□□□□□ -1.82
SSH4YKL124W PMT5P52867 743 aa3.7□□□□□ -1.82
SSH4YKL124W SAE3P89114 91 aa3.7□□□□□ -1.82
SSH4YKL124W CAC2Q04199 468 aa3.7□□□□□ -1.82
SSH4YKL124W PEX30Q06169 523 aa3.7□□□□□ -1.82
SSH4YKL124W BER1Q06688 274 aaKnown RBP3.7□□□□□ -1.82
SSH4YKL124W PRP11Q07350 266 aaPredicted RBP3.7□□□□□ -1.82
SSH4YKL124W ALG6Q12001 544 aaKnown RBP3.7□□□□□ -1.82
SSH4YKL124W YOR283WQ12040 230 aaKnown RBP3.7□□□□□ -1.82
SSH4YKL124W DCN1Q12395 269 aa3.7□□□□□ -1.82
SSH4YKL124W DYN1P36022 4092 aa3.69□□□□□ -1.82
SSH4YKL124W MRP10O75012 95 aa3.69□□□□□ -1.82
SSH4YKL124W CDC7P06243 507 aa3.69□□□□□ -1.82
SSH4YKL124W GRX2P17695 143 aaKnown RBP3.69□□□□□ -1.82
SSH4YKL124W SPS18P32572 300 aa3.69□□□□□ -1.82
SSH4YKL124W PAU2P32612 120 aa3.69□□□□□ -1.82
SSH4YKL124W SNC2P33328 115 aa3.69□□□□□ -1.82
SSH4YKL124W RCN1P36054 211 aa3.69□□□□□ -1.82
SSH4YKL124W YER079WP40052 210 aaKnown RBP3.69□□□□□ -1.82
SSH4YKL124W PDS1P40316 373 aaPredicted RBP3.69□□□□□ -1.82
SSH4YKL124W PGD1P40356 397 aa3.69□□□□□ -1.82
SSH4YKL124W GLC8P41818 229 aa3.69□□□□□ -1.82
SSH4YKL124W GON7P46984 123 aa3.69□□□□□ -1.82
SSH4YKL124W MIC26P50087 233 aa3.69□□□□□ -1.82
SSH4YKL124W TPN1P53099 579 aa3.69□□□□□ -1.82
SSH4YKL124W MMS2P53152 137 aa3.69□□□□□ -1.82
SSH4YKL124W YGR017WP53210 297 aa3.69□□□□□ -1.82
SSH4YKL124W POP6P53218 158 aa3.69□□□□□ -1.82
SSH4YKL124W COX18P53239 316 aa3.69□□□□□ -1.82
SSH4YKL124W RNH201P53942 307 aa3.69□□□□□ -1.82
SSH4YKL124W DID2P69771 204 aa3.69□□□□□ -1.82
SSH4YKL124W RIM9Q04734 239 aa3.69□□□□□ -1.82
SSH4YKL124W YMR317WQ04893 1140 aa3.69□□□□□ -1.82
SSH4YKL124W HOF1Q05080 669 aa3.69□□□□□ -1.82
SSH4YKL124W NOC4Q06512 552 aaPredicted RBP3.69□□□□□ -1.82
SSH4YKL124W YOP1Q12402 180 aa3.69□□□□□ -1.82
SSH4YKL124W RNA14P25298 677 aaKnown RBP3.68□□□□□ -1.82
SSH4YKL124W SUA7P29055 345 aaPredicted RBP3.68□□□□□ -1.82
SSH4YKL124W SFK1P35735 353 aa3.68□□□□□ -1.82
SSH4YKL124W NAT2P37293 288 aa3.68□□□□□ -1.82
SSH4YKL124W SLM6P38343 150 aa3.68□□□□□ -1.82
SSH4YKL124W IPI1P38803 334 aaPredicted RBP3.68□□□□□ -1.82
SSH4YKL124W YND1P40009 630 aa3.68□□□□□ -1.82
SSH4YKL124W GVP36P40531 326 aaKnown RBP3.68□□□□□ -1.82
SSH4YKL124W ATG27P46989 271 aa3.68□□□□□ -1.82
SSH4YKL124W YAE1P47118 141 aaPredicted RBP3.68□□□□□ -1.82
SSH4YKL124W UBC11P52492 156 aa3.68□□□□□ -1.82
SSH4YKL124W YGR045CP53229 120 aa3.68□□□□□ -1.82
SSH4YKL124W SCW4P53334 386 aaKnown RBP3.68□□□□□ -1.82
SSH4YKL124W MRPL22P53881 309 aa3.68□□□□□ -1.82
SSH4YKL124W UBC7Q02159 165 aa3.68□□□□□ -1.82
SSH4YKL124W YMR252CQ04814 134 aa3.68□□□□□ -1.82
SSH4YKL124W IRC25Q07951 179 aa3.68□□□□□ -1.82
SSH4YKL124W ZEO1Q08245 113 aa3.68□□□□□ -1.82
SSH4YKL124W YLR050CQ12155 161 aaKnown RBP3.68□□□□□ -1.82
SSH4YKL124W SNU23Q12368 194 aaPredicted RBP3.68□□□□□ -1.82
SSH4YKL124W ORT1Q12375 292 aa3.68□□□□□ -1.82
SSH4YKL124W TRM13Q12383 476 aa3.68□□□□□ -1.82
SSH4YKL124W PEX4P29340 183 aa3.67□□□□□ -1.82
SSH4YKL124W OCH1P31755 480 aa3.67□□□□□ -1.82
SSH4YKL124W HYM1P32464 399 aa3.67□□□□□ -1.82
SSH4YKL124W NTF2P33331 125 aaKnown RBP3.67□□□□□ -1.82
SSH4YKL124W TMA19P35691 167 aaKnown RBP3.67□□□□□ -1.82
SSH4YKL124W AVT6P40074 448 aa3.67□□□□□ -1.82
SSH4YKL124W MRH4P53166 561 aa3.67□□□□□ -1.82
SSH4YKL124W VBA1Q04301 562 aa3.67□□□□□ -1.82
SSH4YKL124W UPS1Q05776 175 aa3.67□□□□□ -1.82
SSH4YKL124W ARR3Q06598 404 aa3.67□□□□□ -1.82
SSH4YKL124W YDL009CQ12210 107 aa3.67□□□□□ -1.82
SSH4YKL124W MPD1Q12404 318 aaKnown RBP3.67□□□□□ -1.82
SSH4YKL124W HUT1Q12520 339 aa3.67□□□□□ -1.82
SSH4YKL124W SLO1Q3E784 85 aa3.67□□□□□ -1.82
SSH4YKL124W YEL009C-AA0A023PZF2 135 aa3.67□□□□□ -1.82
SSH4YKL124W RPL28P02406 149 aaKnown RBP3.67□□□□□ -1.82
SSH4YKL124W SIR2P06700 562 aa3.67□□□□□ -1.82
SSH4YKL124W DDI2P0CH63 225 aa3.67□□□□□ -1.82
SSH4YKL124W DDI3P0CH64 225 aa3.67□□□□□ -1.82
SSH4YKL124W SEC22P22214 214 aa3.67□□□□□ -1.82
SSH4YKL124W KTI12P34253 313 aaKnown RBP3.67□□□□□ -1.82
SSH4YKL124W SOR1P35497 357 aaKnown RBP3.67□□□□□ -1.82
SSH4YKL124W SWD2P36104 329 aaPredicted RBP3.67□□□□□ -1.82
SSH4YKL124W SMB1P40018 196 aaKnown RBP3.67□□□□□ -1.82
SSH4YKL124W IMD3P50095 523 aaKnown RBP3.67□□□□□ -1.82
SSH4YKL124W BOR1P53838 576 aa3.67□□□□□ -1.82
SSH4YKL124W DUG3P53871 357 aa3.67□□□□□ -1.82
SSH4YKL124W TSA2Q04120 196 aa3.67□□□□□ -1.82
SSH4YKL124W UTP15Q04305 513 aaKnown RBP3.67□□□□□ -1.82
SSH4YKL124W ARC18Q05933 178 aaKnown RBP3.67□□□□□ -1.82
SSH4YKL124W LIP2Q06005 328 aa3.67□□□□□ -1.82
SSH4YKL124W HEM25Q07534 307 aa3.67□□□□□ -1.82
SSH4YKL124W SOR2Q07786 357 aa3.67□□□□□ -1.82
SSH4YKL124W MSA1Q08471 629 aa3.67□□□□□ -1.82
SSH4YKL124W RAX2Q12465 1220 aa3.67□□□□□ -1.82
SSH4YKL124W YIR021W-AQ3E739 70 aa3.67□□□□□ -1.82
SSH4YKL124W YLR099W-AQ3E798 87 aa3.67□□□□□ -1.82
SSH4YKL124W YMR105W-AQ8TGS8 64 aa3.67□□□□□ -1.82
SSH4YKL124W ADK1P07170 222 aaKnown RBP3.66□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 41.7 ms