RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 E2F7Q96AV8 911 aa12.91□□□□□ -0.34
COPA-205ENST00000541366 NACC1Q96RE7 527 aa12.91□□□□□ -0.34
COPA-205ENST00000541366 ACO2Q99798 780 aaKnown RBP12.91□□□□□ -0.34
COPA-205ENST00000541366 EDEM2Q9BV94 578 aa12.91□□□□□ -0.34
COPA-205ENST00000541366 CCDC94Q9BW85 323 aaPredicted RBP12.91□□□□□ -0.34
COPA-205ENST00000541366 GPR88Q9GZN0 384 aa12.91□□□□□ -0.34
COPA-205ENST00000541366 SMG9Q9H0W8 520 aaKnown RBP12.91□□□□□ -0.34
COPA-205ENST00000541366 PTPRHQ9HD43 1115 aa12.91□□□□□ -0.34
COPA-205ENST00000541366 SLC38A7Q9NVC3 462 aa12.91□□□□□ -0.34
COPA-205ENST00000541366 SLC27A5Q9Y2P5 690 aa12.91□□□□□ -0.34
COPA-205ENST00000541366 BTBD18B2RXH4 712 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 HARSP12081 509 aaKnown RBP12.9□□□□□ -0.34
COPA-205ENST00000541366 FDPSP14324 419 aaKnown RBP12.9□□□□□ -0.34
COPA-205ENST00000541366 KCNE1P15382 129 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 CYP4F8P98187 520 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 PPP2R5AQ15172 486 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 ECM1Q16610 540 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 ARHGAP29Q52LW3 1261 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 GPR158Q5T848 1215 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 NAIF1Q69YI7 327 aaPredicted RBP12.9□□□□□ -0.34
COPA-205ENST00000541366 FSTL4Q6MZW2 842 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 TAS1R3Q7RTX0 852 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 BEST2Q8NFU1 509 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 CHFRQ96EP1 664 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 ZBTB45Q96K62 511 aaPredicted RBP12.9□□□□□ -0.34
COPA-205ENST00000541366 HHIPQ96QV1 700 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 TMEM209Q96SK2 561 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 TARS2Q9BW92 718 aaKnown RBP12.9□□□□□ -0.34
COPA-205ENST00000541366 DUSP15Q9H1R2 295 aaPredicted RBP12.9□□□□□ -0.34
COPA-205ENST00000541366 ATXN3LQ9H3M9 355 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 TUFT1Q9NNX1 390 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 TOPORSQ9NS56 1045 aaPredicted RBP12.9□□□□□ -0.34
COPA-205ENST00000541366 CNTN3Q9P232 1028 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 ORC3Q9UBD5 711 aaPredicted RBP12.9□□□□□ -0.34
COPA-205ENST00000541366 TUBGCP4Q9UGJ1 667 aa12.9□□□□□ -0.34
COPA-205ENST00000541366 NUP210Q8TEM1 1887 aaPredicted RBP12.89□□□□□ -0.35
COPA-205ENST00000541366 OTOL1A6NHN0 477 aaPredicted RBP12.89□□□□□ -0.35
COPA-205ENST00000541366 SRRM3A6NNA2 597 aaPredicted RBP12.89□□□□□ -0.35
COPA-205ENST00000541366 K7ERI5 159 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 ABLIM1O14639 778 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 CDKL5O76039 1030 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 U2AF2P26368 475 aaKnown RBP eCLIP12.89□□□□□ -0.353e-6■■■■□ 20.6
COPA-205ENST00000541366 GABRR2P28476 465 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 RPL9P32969 192 aaKnown RBP12.89□□□□□ -0.35
COPA-205ENST00000541366 MCM7P33993 719 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 EFNA5P52803 228 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 EPHB3P54753 998 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 CREB5Q02930 508 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 SPAG1Q07617 926 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 SH3PXD2AQ5TCZ1 1133 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 SYNPOQ8N3V7 929 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 ATAD1Q8NBU5 361 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 APPL2Q8NEU8 664 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 ZC3H10Q96K80 434 aaKnown RBP12.89□□□□□ -0.35
COPA-205ENST00000541366 IFT74Q96LB3 600 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 ACAP3Q96P50 834 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 POLR3CQ9BUI4 534 aaPredicted RBP12.89□□□□□ -0.35
COPA-205ENST00000541366 FBRSL1Q9HCM7 1045 aaKnown RBP12.89□□□□□ -0.35
COPA-205ENST00000541366 VPS45Q9NRW7 570 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 PDRG1Q9NUG6 133 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 TPCN1Q9ULQ1 816 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 PCDHB8Q9UN66 801 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 SLC8A2Q9UPR5 921 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 PCDHGA5Q9Y5G8 931 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 SMG1Q96Q15 3661 aaKnown RBP12.89□□□□□ -0.35
COPA-205ENST00000541366 CACNA1EQ15878 2313 aa12.89□□□□□ -0.35
COPA-205ENST00000541366 NUP205Q92621 2012 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 ASCC3Q8N3C0 2202 aaKnown RBP12.88□□□□□ -0.35
COPA-205ENST00000541366 LOC400499M0QZD8 3231 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 CCDC163A0A0D9SF12 145 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 CCDC169A6NNP5 214 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 RNF40O75150 1001 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 EGFP01133 1207 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 MARCKSP29966 332 aaPredicted RBP12.88□□□□□ -0.35
COPA-205ENST00000541366 ITPRIPL2Q3MIP1 535 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 TMEM196Q5HYL7 178 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 TRIM68Q6AZZ1 485 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 HAUS6Q7Z4H7 955 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 DNAJB7Q7Z6W7 309 aaPredicted RBP12.88□□□□□ -0.35
COPA-205ENST00000541366 BPIFB1Q8TDL5 484 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 GATA6Q92908 595 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 TCHPQ9BT92 498 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 SCNM1Q9BWG6 230 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 ADAM33Q9BZ11 813 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 BHMT2Q9H2M3 363 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 HPS4Q9NQG7 708 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 GKN1Q9NS71 199 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 MAFFQ9ULX9 164 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 INVSQ9Y283 1065 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 FREM2Q5SZK8 3169 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 GON4LQ3T8J9 2241 aa12.88□□□□□ -0.35
COPA-205ENST00000541366 LNP1A1A4G5 178 aa12.87□□□□□ -0.35
COPA-205ENST00000541366 MTMR11A4FU01 709 aa12.87□□□□□ -0.35
COPA-205ENST00000541366 PFKFB2O60825 505 aa12.87□□□□□ -0.35
COPA-205ENST00000541366 OAZ2O95190 189 aa12.87□□□□□ -0.35
COPA-205ENST00000541366 CAVIN2O95810 425 aa12.87□□□□□ -0.35
COPA-205ENST00000541366 RPA1P27694 616 aa12.87□□□□□ -0.35
COPA-205ENST00000541366 ALDH1A3P47895 512 aa12.87□□□□□ -0.35
COPA-205ENST00000541366 NPTX2P47972 431 aa12.87□□□□□ -0.35
COPA-205ENST00000541366 GUCY2FP51841 1108 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms