RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	C18orf25	Q96B23	403 aa	Predicted RBP	11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	ZMAT2	Q96NC0	199 aa	Known RBP	11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	CRISPLD1	Q9H336	500 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	TTC12	Q9H892	705 aa	Predicted RBP	11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	GJB4	Q9NTQ9	266 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	OBP2A	Q9NY56	170 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	NEUROG3	Q9Y4Z2	214 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	NUP210	Q8TEM1	1887 aa	Predicted RBP	11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	KIF26A	Q9ULI4	1882 aa	Predicted RBP	11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	PATE3	B3GLJ2	98 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	CDX4	O14627	284 aa	Predicted RBP	11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	ZIC2	O95409	532 aa	Predicted RBP	11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	APBB3	O95704	486 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	EGF	P01133	1207 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	GABRR2	P28476	465 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	GRM5	P41594	1212 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	ALDH1A3	P47895	512 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	FXR2	P51116	673 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	STK3	Q13188	491 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	PTPA	Q15257	358 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	ZNF568	Q3ZCX4	644 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	XKR4	Q5GH76	650 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	BMP2KL	Q5H9B9	411 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	CPLX2	Q6PUV4	134 aa	Known RBP	11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	CYP2U1	Q7Z449	544 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	BEST2	Q8NFU1	509 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	KCNB2	Q92953	911 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	TBC1D32	Q96NH3	1257 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	LARP6	Q9BRS8	491 aa	Known RBP	11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	SMG9	Q9H0W8	520 aa	Known RBP	11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	CDT1	Q9H211	546 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	THG1L	Q9NWX6	298 aa	Known RBP	11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	TPCN1	Q9ULQ1	816 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	PCDHB8	Q9UN66	801 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	INVS	Q9Y283	1065 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	MSRB2	Q9Y3D2	182 aa		11.48	□□□□□ -0.57
CLDND1-231	ENST00000515620	NBEA	Q8NFP9	2946 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	OTOL1	A6NHN0	477 aa	Predicted RBP	11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	SOAT2	O75908	522 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	XRCC6	P12956	609 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	U2AF2	P26368	475 aa	Known RBP eCLIP	11.47	□□□□□ -0.57	1e-9	■■■□□ 14.8
CLDND1-231	ENST00000515620	MARCKS	P29966	332 aa	Predicted RBP	11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	RPL9	P32969	192 aa	Known RBP	11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	TXK	P42681	527 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	EFNA5	P52803	228 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	CYP4F8	P98187	520 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	YWHAH	Q04917	246 aa	Predicted RBP	11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	DUSP4	Q13115	394 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	TOB2	Q14106	344 aa	Predicted RBP	11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	PPP2R5A	Q15172	486 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	SOWAHC	Q53LP3	525 aa	Predicted RBP	11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	PMS2CL	Q68D20	193 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	NAIF1	Q69YI7	327 aa	Predicted RBP	11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	TRIM68	Q6AZZ1	485 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	C19orf48	Q6RUI8	117 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	ALKAL1	Q6UXT8	129 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	TTC9B	Q8N6N2	239 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	RPLP0P6	Q8NHW5	317 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	CHFR	Q96EP1	664 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	POLR3C	Q9BUI4	534 aa	Predicted RBP	11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	GKN1	Q9NS71	199 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	TNFSF13B	Q9Y275	285 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	TIMM13	Q9Y5L4	95 aa	Predicted RBP	11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	TRIP11	Q15643	1979 aa		11.47	□□□□□ -0.57
CLDND1-231	ENST00000515620	DMXL2	Q8TDJ6	3036 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	SPAAR	A0A1B0GVQ0	90 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	ARHGEF35	A5YM69	484 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	TRDMT1	O14717	391 aa	Known RBP	11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	DTNB	O60941	627 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	FGF19	O95750	216 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	SPATA31C1	P0DKV0	1188 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	KCNE1	P15382	129 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	XBP1	P17861	261 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	CYP11B2	P19099	503 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	PSMA5	P28066	241 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	HSPA4	P34932	840 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	DGKE	P52429	567 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	IRX4	P78413	519 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	NR5A1	Q13285	461 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	DMC1	Q14565	340 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	PADI6	Q6TGC4	694 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	TMEM130	Q8N3G9	435 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	PSMG2	Q969U7	264 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	IFT74	Q96LB3	600 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	TPSD1	Q9BZJ3	242 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	EBF3	Q9H4W6	596 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	SLC32A1	Q9H598	525 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	TASP1	Q9H6P5	420 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	FBRSL1	Q9HCM7	1045 aa	Known RBP	11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	POLD4	Q9HCU8	107 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	HPS4	Q9NQG7	708 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	CNTN3	Q9P232	1028 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	TUBGCP4	Q9UGJ1	667 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	SLC27A5	Q9Y2P5	690 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	GPSM3	Q9Y4H4	160 aa		11.46	□□□□□ -0.57
CLDND1-231	ENST00000515620	FLNB	O75369	2602 aa	Known RBP	11.46	□□□□□ -0.58
CLDND1-231	ENST00000515620	MTMR11	A4FU01	709 aa		11.45	□□□□□ -0.58
CLDND1-231	ENST00000515620	MEFV	O15553	781 aa	Predicted RBP	11.45	□□□□□ -0.58
CLDND1-231	ENST00000515620	NEMF	O60524	1076 aa		11.45	□□□□□ -0.58

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