RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ITIH3Q06033 890 aa17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 MYO1EQ12965 1108 aa17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 SMAD2Q15796 467 aaKnown RBP17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 OVOS1Q6IE37 1185 aa17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 KLHL10Q6JEL2 608 aa17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 SPATA31D4Q6ZUB0 917 aa17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 INTS8Q75QN2 995 aaKnown RBP17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 C12orf76Q8N812 135 aaPredicted RBP17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 KREMEN2Q8NCW0 462 aa17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 ZNF516Q92618 1163 aa17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 MKNK1Q9BUB5 465 aa17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 ADAM7Q9H2U9 754 aa17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 BRWD1Q9NSI6 2320 aa17.53■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 PPP1R3GB7ZBB8 358 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 EPB41P11171 864 aaKnown RBP17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 VAMP7P51809 220 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 ARPP19P56211 112 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 DLG4P78352 724 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 FKBP3Q00688 224 aaKnown RBP17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 ENPEPQ07075 957 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 CES5AQ6NT32 575 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 METTL23Q86XA0 190 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 ZC3H3Q8IXZ2 948 aaKnown RBP17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 GPT2Q8TD30 523 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 NELFBQ8WX92 580 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 SUSD6Q92537 303 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 EEF2KMTQ96G04 330 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 HPDLQ96IR7 371 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 GDAP2Q9NXN4 497 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 CTNND2Q9UQB3 1225 aa17.52■□□□□ 0.4
MSH5-SAPCD1-206ENST00000491552 XIRP2A4UGR9 3374 aa17.52■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 WDR27A2RRH5 827 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 OR6C75A6NL08 312 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 SLC16A3O15427 465 aaKnown RBP17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PHACTR2O75167 634 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CPB1P15086 417 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 BIRC3Q13489 604 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TRPC3Q13507 836 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 LIN9Q5TKA1 542 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TDRD10Q5VZ19 366 aaKnown RBP17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 WSCD1Q658N2 575 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TMC5Q6UXY8 1006 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CMASQ8NFW8 434 aaPredicted RBP17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ADAMTS19Q8TE59 1207 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 RIPOR3Q96MK2 946 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ZDHHC7Q9NXF8 308 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 SNX9Q9Y5X1 595 aa17.51■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 BICDL2A1A5D9 508 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 IKBKBO14920 756 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 HUS1O60921 280 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 RFPL2O75678 378 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ABLIM3O94929 683 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CST3P01034 146 aaPredicted RBP17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 C4BPAP04003 597 aaKnown RBP17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 C8AP07357 584 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MTHFRP42898 656 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PAK1Q13153 545 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CBX2Q14781 532 aaPredicted RBP17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 C1orf220Q5T0J3 134 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TPGS2Q68CL5 300 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TTI2Q6NXR4 508 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 FOXR2Q6PJQ5 311 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 THEM5Q8N1Q8 247 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PDCL2Q8N4E4 241 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TOP6BLQ8N6T0 577 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ZNF461Q8TAF7 563 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 L1RE1Q9UN81 338 aa17.5■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MTCL1Q9Y4B5 1905 aaKnown RBP17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CCDC195A0A1B0GUA6 201 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ZMYND10O75800 440 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 STAU1O95793 577 aaKnown RBP17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MBD3O95983 291 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 WEE2P0C1S8 567 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TRIM49P0CI25 452 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TRIM49CP0CI26 452 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ATICP31939 592 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ZACNQ401N2 412 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PPM1LQ5SGD2 360 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CYP26C1Q6V0L0 522 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 C15orf39Q6ZRI6 1047 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CCDC149Q6ZUS6 474 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 GPR149Q86SP6 731 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TMEM86AQ8N2M4 240 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 SLC7A14Q8TBB6 771 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 SPATA18Q8TC71 538 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 SYAP1Q96A49 352 aaPredicted RBP17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CEP63Q96MT8 703 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 NECTIN4Q96NY8 510 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 UHRF1Q96T88 793 aaPredicted RBP17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 DUSP9Q99956 384 aaKnown RBP17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PRKAG3Q9UGI9 489 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 AFF4Q9UHB7 1163 aaKnown RBP17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CDH22Q9UJ99 828 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 UNC80Q8N2C7 3258 aa17.49■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PAPLNO95428 1278 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 VNN1O95497 513 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 HNRNPA1P09651 372 aaKnown RBP eCLIP17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 OR4Q2P0C623 313 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ATF2P15336 505 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 HOXA9P31269 272 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms