RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 RECQL4O94761 1208 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 PAEPP09466 180 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 RAP1GAPP47736 663 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 ZBTB6Q15916 424 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 PASD1Q8IV76 773 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 PXYLP1Q8TE99 480 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 SDCBP2Q9H190 292 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 SMYD3Q9H7B4 428 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 EHD2Q9NZN4 543 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 PCDHGC3Q9UN70 934 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 NOC2LQ9Y3T9 749 aaKnown RBP15.86■□□□□ 0.13
CCDC47-201ENST00000225726 HES2Q9Y543 173 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 RHOXF2BP0C7M4 288 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 BRD2P25440 801 aaKnown RBP15.86■□□□□ 0.13
CCDC47-201ENST00000225726 PTPROQ16827 1216 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 LIN9Q5TKA1 542 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 RAET1EQ8TD07 263 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 RPS6KC1Q96S38 1066 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 RHOXF2Q9BQY4 288 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 SMARCAL1Q9NZC9 954 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 ALG6Q9Y672 507 aa15.86■□□□□ 0.13
CCDC47-201ENST00000225726 DDX3YO15523 660 aaKnown RBP15.85■□□□□ 0.13
CCDC47-201ENST00000225726 TUBBP07437 444 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 ZMAT2Q96NC0 199 aaKnown RBP15.85■□□□□ 0.13
CCDC47-201ENST00000225726 TRIP11Q15643 1979 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 C1QBPQ07021 282 aaKnown RBP15.85■□□□□ 0.13
CCDC47-201ENST00000225726 MYO1EQ12965 1108 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 ZNF394Q53GI3 561 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 TTC39CQ8N584 583 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 ACTRT1Q8TDG2 376 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 ZNF518BQ9C0D4 1074 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 SENP6Q9GZR1 1112 aaPredicted RBP15.85■□□□□ 0.13
CCDC47-201ENST00000225726 RAB21Q9UL25 225 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 MIF4GDA9UHW6 222 aaKnown RBP15.85■□□□□ 0.13
CCDC47-201ENST00000225726 TNNC1P63316 161 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 XKR4Q5GH76 650 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 APOL6Q9BWW8 343 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 CXCL16Q9H2A7 254 aa15.85■□□□□ 0.13
CCDC47-201ENST00000225726 CHORDC1Q9UHD1 332 aaPredicted RBP15.85■□□□□ 0.13
CCDC47-201ENST00000225726 MED7O43513 233 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 CILPO75339 1184 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 CABYRO75952 493 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 VEGFBP49765 207 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 CDH8P55286 799 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 MGAT3Q09327 533 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 MESDQ14696 234 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 RNF180Q86T96 592 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 WNT8BQ93098 351 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 ZSWIM1Q9BR11 485 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 ADAM22Q9P0K1 906 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 UBQLN1Q9UMX0 589 aaKnown RBP15.84■□□□□ 0.13
CCDC47-201ENST00000225726 IPPQ9Y573 584 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 TARSL2A2RTX5 802 aaKnown RBP15.84■□□□□ 0.13
CCDC47-201ENST00000225726 TMEM110-MUSTN1A8MSY1 372 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 MYCNP04198 464 aaPredicted RBP15.84■□□□□ 0.13
CCDC47-201ENST00000225726 AKAP5P24588 427 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 SSTR3P32745 418 aaPredicted RBP15.84■□□□□ 0.13
CCDC47-201ENST00000225726 CLCN6P51797 869 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 RAD23BP54727 409 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 BRD3Q15059 726 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 CCDC70Q6NSX1 233 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 RASGEF1CQ8N431 466 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 LRRC52Q8N7C0 313 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 TUBGCP4Q9UGJ1 667 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 TLR3O15455 904 aaKnown RBP15.84■□□□□ 0.13
CCDC47-201ENST00000225726 CEP104O60308 925 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 KCNE1P15382 129 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 RRM1P23921 792 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 CDH5P33151 784 aaPredicted RBP15.84■□□□□ 0.13
CCDC47-201ENST00000225726 USP38Q8NB14 1042 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 TMEM35BQ8NCS4 154 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 SMG8Q8ND04 991 aaKnown RBP15.84■□□□□ 0.13
CCDC47-201ENST00000225726 WHAMMQ8TF30 809 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 TFAP2BQ92481 460 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 PNKPQ96T60 521 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 C11orf70Q9BRQ4 267 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 PARP2Q9UGN5 583 aa15.84■□□□□ 0.13
CCDC47-201ENST00000225726 GRIN2DO15399 1336 aa15.83■□□□□ 0.13
CCDC47-201ENST00000225726 XPOTO43592 962 aaKnown RBP15.83■□□□□ 0.12
CCDC47-201ENST00000225726 RPS6KA5O75582 802 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 INCA1Q0VD86 236 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 PTP4A2Q12974 167 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 TWF2Q6IBS0 349 aaKnown RBP15.83■□□□□ 0.12
CCDC47-201ENST00000225726 WNT8AQ9H1J5 351 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 CEP83Q9Y592 693 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 CHRNA1P02708 482 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 COMTP21964 271 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 PTPN11Q06124 597 aaPredicted RBP15.83■□□□□ 0.12
CCDC47-201ENST00000225726 PTGISQ16647 500 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 UBL4BQ8N7F7 174 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 SLC4A11Q8NBS3 891 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 C18orf25Q96B23 403 aaPredicted RBP15.83■□□□□ 0.12
CCDC47-201ENST00000225726 CHST12Q9NRB3 414 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 SCINQ9Y6U3 715 aa15.83■□□□□ 0.12
CCDC47-201ENST00000225726 PGRMC1O00264 195 aaKnown RBP15.82■□□□□ 0.12
CCDC47-201ENST00000225726 CD4P01730 458 aa15.82■□□□□ 0.12
CCDC47-201ENST00000225726 CALB1P05937 261 aa15.82■□□□□ 0.12
CCDC47-201ENST00000225726 ARHGEF6Q15052 776 aa15.82■□□□□ 0.12
CCDC47-201ENST00000225726 MMS22LQ6ZRQ5 1243 aa15.82■□□□□ 0.12
CCDC47-201ENST00000225726 TMEM176AQ96HP8 235 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms