RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeastyeast

Gene CUP9, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CUP9YPL177C YFR032C-BQ8TGU2 87 aa1.63□□□□□ -2.15
CUP9YPL177C QCR7P00128 127 aa1.62□□□□□ -2.15
CUP9YPL177C RPL27AP0C2H6 136 aaKnown RBP1.62□□□□□ -2.15
CUP9YPL177C YGL010WP25338 174 aa1.62□□□□□ -2.15
CUP9YPL177C ASF2P32448 525 aaPredicted RBP1.62□□□□□ -2.15
CUP9YPL177C AST2P39945 430 aaKnown RBP1.62□□□□□ -2.15
CUP9YPL177C GVP36P40531 326 aaKnown RBP1.62□□□□□ -2.15
CUP9YPL177C GET1P53192 235 aa1.62□□□□□ -2.15
CUP9YPL177C CPA1P07258 411 aaKnown RBP1.61□□□□□ -2.15
CUP9YPL177C RPL2AP0CX45 254 aaKnown RBP1.61□□□□□ -2.15
CUP9YPL177C RPL2BP0CX46 254 aaKnown RBP1.61□□□□□ -2.15
CUP9YPL177C KSS1P14681 368 aa1.61□□□□□ -2.15
CUP9YPL177C YBR220CP38318 560 aa1.61□□□□□ -2.15
CUP9YPL177C NOP19P53317 196 aaPredicted RBP1.61□□□□□ -2.15
CUP9YPL177C NUP49Q02199 472 aa1.61□□□□□ -2.15
CUP9YPL177C YDR249CQ03787 373 aa1.61□□□□□ -2.15
CUP9YPL177C YOL160WQ08321 113 aa1.61□□□□□ -2.15
CUP9YPL177C MET5P47169 1442 aa1.6□□□□□ -2.15
CUP9YPL177C MER1P16523 270 aa1.6□□□□□ -2.15
CUP9YPL177C APA2P22108 325 aa1.6□□□□□ -2.15
CUP9YPL177C BET1P22804 142 aa1.6□□□□□ -2.15
CUP9YPL177C SNC2P33328 115 aa1.6□□□□□ -2.15
CUP9YPL177C YCR087C-AP37263 153 aa1.6□□□□□ -2.15
CUP9YPL177C FSF1Q12029 327 aaKnown RBP1.6□□□□□ -2.15
CUP9YPL177C FPR1P20081 114 aaKnown RBP1.59□□□□□ -2.15
CUP9YPL177C ADE1P27616 306 aa1.59□□□□□ -2.15
CUP9YPL177C RPL13BP40212 199 aaKnown RBP1.59□□□□□ -2.15
CUP9YPL177C LSM7P53905 115 aaKnown RBP1.59□□□□□ -2.15
CUP9YPL177C YDR274CP87283 123 aa1.59□□□□□ -2.15
CUP9YPL177C GPM2Q12008 311 aa1.59□□□□□ -2.15
CUP9YPL177C RPL13AQ12690 199 aaPredicted RBP1.59□□□□□ -2.15
CUP9YPL177C RAD9P14737 1309 aa1.59□□□□□ -2.16
CUP9YPL177C URA5P13298 226 aaKnown RBP1.58□□□□□ -2.16
CUP9YPL177C RPB3P16370 318 aaKnown RBP1.58□□□□□ -2.16
CUP9YPL177C ATP15P21306 62 aa1.58□□□□□ -2.16
CUP9YPL177C TRM5P38793 499 aa1.58□□□□□ -2.16
CUP9YPL177C SAY1P53324 424 aa1.58□□□□□ -2.16
CUP9YPL177C COG5P53951 403 aa1.58□□□□□ -2.16
CUP9YPL177C ANT1Q06497 328 aa1.58□□□□□ -2.16
CUP9YPL177C RPL25P04456 142 aaKnown RBP1.57□□□□□ -2.16
CUP9YPL177C QCR8P08525 94 aa1.57□□□□□ -2.16
CUP9YPL177C ATP7P30902 174 aa1.57□□□□□ -2.16
CUP9YPL177C UPS2P35200 230 aa1.57□□□□□ -2.16
CUP9YPL177C MMS2P53152 137 aa1.57□□□□□ -2.16
CUP9YPL177C YNG1Q08465 219 aa1.57□□□□□ -2.16
CUP9YPL177C GPA2P10823 449 aa1.56□□□□□ -2.16
CUP9YPL177C TMA19P35691 167 aaKnown RBP1.56□□□□□ -2.16
CUP9YPL177C YBR285WP38354 144 aa1.56□□□□□ -2.16
CUP9YPL177C ERJ5P43613 295 aaPredicted RBP1.56□□□□□ -2.16
CUP9YPL177C AIM25P47140 327 aa1.56□□□□□ -2.16
CUP9YPL177C HOP2P53187 214 aa1.56□□□□□ -2.16
CUP9YPL177C POP3P53833 195 aaPredicted RBP1.56□□□□□ -2.16
CUP9YPL177C MDM32Q12171 622 aa1.56□□□□□ -2.16
CUP9YPL177C ATG40Q99325 256 aa1.56□□□□□ -2.16
CUP9YPL177C YIL177CP40434 1758 aa1.56□□□□□ -2.16
CUP9YPL177C YJL225CP40889 1758 aa1.56□□□□□ -2.16
CUP9YPL177C YBR209WP38311 105 aa1.55□□□□□ -2.16
CUP9YPL177C EGD2P38879 174 aaKnown RBP1.55□□□□□ -2.16
CUP9YPL177C YER034WP40022 185 aaKnown RBP1.55□□□□□ -2.16
CUP9YPL177C KNH1P50112 268 aa1.55□□□□□ -2.16
CUP9YPL177C YLR236CA0A023PZG4 107 aa1.54□□□□□ -2.16
CUP9YPL177C QCR6P00127 147 aa1.54□□□□□ -2.16
CUP9YPL177C MAG1P22134 296 aaKnown RBP1.54□□□□□ -2.16
CUP9YPL177C RAD51P25454 400 aa1.54□□□□□ -2.16
CUP9YPL177C TFC1P32367 649 aa1.54□□□□□ -2.16
CUP9YPL177C SHG1P38337 142 aa1.54□□□□□ -2.16
CUP9YPL177C SEC72P39742 193 aaKnown RBP1.54□□□□□ -2.16
CUP9YPL177C ERG10P41338 398 aaKnown RBP1.54□□□□□ -2.16
CUP9YPL177C GGA1Q06336 557 aa1.54□□□□□ -2.16
CUP9YPL177C SIR2P06700 562 aa1.53□□□□□ -2.16
CUP9YPL177C MRS1P07266 363 aa1.53□□□□□ -2.16
CUP9YPL177C CKS1P20486 150 aaKnown RBP1.53□□□□□ -2.16
CUP9YPL177C RME1P32338 300 aaKnown RBP1.53□□□□□ -2.16
CUP9YPL177C VMA22P38784 181 aa1.53□□□□□ -2.16
CUP9YPL177C HMF1P40037 129 aaKnown RBP1.53□□□□□ -2.16
CUP9YPL177C MZM1Q03429 123 aaPredicted RBP1.53□□□□□ -2.16
CUP9YPL177C ARO80Q04052 950 aa1.53□□□□□ -2.16
CUP9YPL177C GIM5Q04493 163 aa1.53□□□□□ -2.16
CUP9YPL177C IKI3Q06706 1349 aaKnown RBP1.53□□□□□ -2.16
CUP9YPL177C CNB1P25296 175 aa1.52□□□□□ -2.17
CUP9YPL177C CAF4P36130 643 aa1.52□□□□□ -2.17
CUP9YPL177C POG1P40473 351 aa1.52□□□□□ -2.17
CUP9YPL177C RTC4P53850 401 aa1.52□□□□□ -2.17
CUP9YPL177C YET3Q07451 203 aa1.52□□□□□ -2.17
CUP9YPL177C RAD28Q12021 506 aa1.52□□□□□ -2.17
CUP9YPL177C TAH1P25638 111 aaPredicted RBP1.51□□□□□ -2.17
CUP9YPL177C SHE2P36068 246 aaKnown RBP RIP-Chip data1.51□□□□□ -2.17not detected
CUP9YPL177C PDS1P40316 373 aaPredicted RBP1.51□□□□□ -2.17
CUP9YPL177C YNL184CP53876 108 aa1.51□□□□□ -2.17
CUP9YPL177C NRK1P53915 240 aa1.51□□□□□ -2.17
CUP9YPL177C SNO1Q03144 224 aa1.51□□□□□ -2.17
CUP9YPL177C HNT1Q04344 158 aaKnown RBP1.51□□□□□ -2.17
CUP9YPL177C NOC4Q06512 552 aaPredicted RBP1.51□□□□□ -2.17
CUP9YPL177C GRE1Q08969 168 aa1.51□□□□□ -2.17
CUP9YPL177C RIO1Q12196 484 aaKnown RBP1.51□□□□□ -2.17
CUP9YPL177C YDL085C-AQ3E7B7 68 aaKnown RBP1.51□□□□□ -2.17
CUP9YPL177C RPL35AP0CX84 120 aaKnown RBP1.5□□□□□ -2.17
CUP9YPL177C RPL35BP0CX85 120 aaKnown RBP1.5□□□□□ -2.17
CUP9YPL177C KDX1P36005 433 aa1.5□□□□□ -2.17
CUP9YPL177C VPS51P36116 164 aa1.5□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 25.3 ms