RNA–Protein interactions for RNA: YER111C

SWI4, Transcript of DNA binding component of the SBF complex (Swi4p-Swi6p), yeast

Gene SWI4, Length 3,282 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWI4	YER111C	SOD1	P00445	154 aa	Known RBP	0.91	□□□□□ -2.26
SWI4	YER111C	SIR2	P06700	562 aa		0.91	□□□□□ -2.26
SWI4	YER111C	YHR032W-A	P0C5N6	59 aa		0.91	□□□□□ -2.26
SWI4	YER111C	RPS23A	P0CX29	145 aa	Known RBP	0.91	□□□□□ -2.26
SWI4	YER111C	RPS23B	P0CX30	145 aa		0.91	□□□□□ -2.26
SWI4	YER111C	ERD2	P18414	219 aa		0.91	□□□□□ -2.26
SWI4	YER111C	ECM4	P36156	370 aa		0.91	□□□□□ -2.26
SWI4	YER111C	ECM13	P38195	257 aa		0.91	□□□□□ -2.26
SWI4	YER111C	DOG2	P38773	246 aa		0.91	□□□□□ -2.26
SWI4	YER111C	DOG1	P38774	246 aa		0.91	□□□□□ -2.26
SWI4	YER111C	DIA1	P54005	336 aa		0.91	□□□□□ -2.26
SWI4	YER111C	NIP7	Q08962	181 aa	Known RBP	0.91	□□□□□ -2.26
SWI4	YER111C	SMT3	Q12306	101 aa	Known RBP	0.91	□□□□□ -2.26
SWI4	YER111C	CMC2	Q3E7A4	109 aa		0.91	□□□□□ -2.26
SWI4	YER111C	YHR139C-A	O13536	103 aa		0.9	□□□□□ -2.26
SWI4	YER111C	VPS51	P36116	164 aa		0.9	□□□□□ -2.26
SWI4	YER111C	ECM33	P38248	429 aa	Known RBP	0.9	□□□□□ -2.26
SWI4	YER111C	SHG1	P38337	142 aa		0.9	□□□□□ -2.26
SWI4	YER111C	YHR125W	P38831	101 aa		0.9	□□□□□ -2.26
SWI4	YER111C	OST2	P46964	130 aa		0.9	□□□□□ -2.26
SWI4	YER111C	PIR5	P46999	287 aa		0.9	□□□□□ -2.26
SWI4	YER111C	YJR149W	P47177	404 aa		0.9	□□□□□ -2.26
SWI4	YER111C	YLR036C	Q07986	203 aa		0.9	□□□□□ -2.26
SWI4	YER111C	IES4	Q08561	116 aa		0.9	□□□□□ -2.26
SWI4	YER111C	ADE1	P27616	306 aa		0.9	□□□□□ -2.27
SWI4	YER111C	MRPL28	P36527	147 aa		0.9	□□□□□ -2.27
SWI4	YER111C	DSK2	P48510	373 aa		0.9	□□□□□ -2.27
SWI4	YER111C	SNO1	Q03144	224 aa		0.9	□□□□□ -2.27
SWI4	YER111C	GRH1	Q04410	372 aa	Known RBP	0.9	□□□□□ -2.27
SWI4	YER111C	GIM5	Q04493	163 aa		0.9	□□□□□ -2.27
SWI4	YER111C	NOC4	Q06512	552 aa	Predicted RBP	0.9	□□□□□ -2.27
SWI4	YER111C	SAS5	Q99314	248 aa		0.9	□□□□□ -2.27
SWI4	YER111C	PUT1	P09368	476 aa		0.9	□□□□□ -2.27
SWI4	YER111C	ARC15	P40518	154 aa	RIP-Chip data	0.9	□□□□□ -2.27	not detected
SWI4	YER111C	PRM8	P53174	237 aa		0.9	□□□□□ -2.27
SWI4	YER111C	ABF2	Q02486	183 aa		0.9	□□□□□ -2.27
SWI4	YER111C	LPP1	Q04396	274 aa		0.9	□□□□□ -2.27
SWI4	YER111C	EMP46	Q12396	444 aa		0.9	□□□□□ -2.27
SWI4	YER111C	HIS3	P06633	220 aa		0.89	□□□□□ -2.27
SWI4	YER111C	EGD2	P38879	174 aa	Known RBP	0.89	□□□□□ -2.27
SWI4	YER111C	COG3	P40094	801 aa		0.89	□□□□□ -2.27
SWI4	YER111C	SYF2	P53277	215 aa	Predicted RBP	0.89	□□□□□ -2.27
SWI4	YER111C	YIP3	P53633	176 aa		0.89	□□□□□ -2.27
SWI4	YER111C	BRX1	Q08235	291 aa	Known RBP	0.89	□□□□□ -2.27
SWI4	YER111C	JIP3	O13555	125 aa		0.89	□□□□□ -2.27
SWI4	YER111C	RPF1	P38805	295 aa	Known RBP	0.89	□□□□□ -2.27
SWI4	YER111C	PDS1	P40316	373 aa	Predicted RBP	0.89	□□□□□ -2.27
SWI4	YER111C	YJR141W	P47172	347 aa	Predicted RBP	0.89	□□□□□ -2.27
SWI4	YER111C	YGR026W	P53217	278 aa		0.89	□□□□□ -2.27
SWI4	YER111C	RTC4	P53850	401 aa		0.89	□□□□□ -2.27
SWI4	YER111C	PET191	Q02772	108 aa		0.89	□□□□□ -2.27
SWI4	YER111C	FCF1	Q05498	189 aa	Predicted RBP	0.89	□□□□□ -2.27
SWI4	YER111C	FUS2	Q05670	677 aa		0.89	□□□□□ -2.27
SWI4	YER111C	YET3	Q07451	203 aa		0.89	□□□□□ -2.27
SWI4	YER111C	YPL162C	Q12042	273 aa		0.89	□□□□□ -2.27
SWI4	YER111C	PRM7	Q12459	698 aa		0.89	□□□□□ -2.27
SWI4	YER111C	MHT1	Q12525	324 aa		0.89	□□□□□ -2.27
SWI4	YER111C	CCH1	P50077	2039 aa		0.89	□□□□□ -2.27
SWI4	YER111C	CDC8	P00572	216 aa		0.88	□□□□□ -2.27
SWI4	YER111C	YLR156W	P0CE96	114 aa		0.88	□□□□□ -2.27
SWI4	YER111C	YLR159W	P0CE97	114 aa		0.88	□□□□□ -2.27
SWI4	YER111C	YLR161W	P0CE98	114 aa		0.88	□□□□□ -2.27
SWI4	YER111C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	0.88	□□□□□ -2.27	not detected
SWI4	YER111C	TOM40	P23644	387 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	AIM2	P39721	246 aa		0.88	□□□□□ -2.27
SWI4	YER111C	GLE2	P40066	365 aa		0.88	□□□□□ -2.27
SWI4	YER111C	TIF34	P40217	347 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	POG1	P40473	351 aa		0.88	□□□□□ -2.27
SWI4	YER111C	SSU72	P53538	206 aa	Predicted RBP	0.88	□□□□□ -2.27
SWI4	YER111C	LSM7	P53905	115 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	YMR279C	Q03263	540 aa		0.88	□□□□□ -2.27
SWI4	YER111C	YPL229W	Q99395	206 aa		0.88	□□□□□ -2.27
SWI4	YER111C	RPS28B	P0C0X0	67 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	KRE1	P17260	313 aa		0.88	□□□□□ -2.27
SWI4	YER111C	ARC19	P33204	171 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	SUE1	Q06524	206 aa		0.88	□□□□□ -2.27
SWI4	YER111C	YOL024W	Q08172	172 aa		0.88	□□□□□ -2.27
SWI4	YER111C	ATO3	Q12359	275 aa		0.88	□□□□□ -2.27
SWI4	YER111C	PEX11	Q12462	236 aa		0.88	□□□□□ -2.27
SWI4	YER111C	AGC1	Q12482	902 aa		0.88	□□□□□ -2.27
SWI4	YER111C	NOT5	Q12514	560 aa	Predicted RBP	0.88	□□□□□ -2.27
SWI4	YER111C	RPS28A	Q3E7X9	67 aa	Predicted RBP	0.88	□□□□□ -2.27
SWI4	YER111C	YFR032C-B	Q8TGU2	87 aa		0.88	□□□□□ -2.27
SWI4	YER111C	IKI3	Q06706	1349 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	YPR096C	O13587	100 aa		0.88	□□□□□ -2.27
SWI4	YER111C	RPL9A	P05738	191 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	MRS1	P07266	363 aa		0.88	□□□□□ -2.27
SWI4	YER111C	RPS24A	P0CX31	135 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	RPS24B	P0CX32	135 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	CKS1	P20486	150 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	MRPS28	P21771	286 aa		0.88	□□□□□ -2.27
SWI4	YER111C	POP4	P38336	279 aa		0.88	□□□□□ -2.27
SWI4	YER111C	HMF1	P40037	129 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	RPL9B	P51401	191 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	YNG1	Q08465	219 aa		0.88	□□□□□ -2.27
SWI4	YER111C	USB1	Q12208	290 aa	Known RBP	0.88	□□□□□ -2.27
SWI4	YER111C	MBF1	O14467	151 aa	Known RBP	0.87	□□□□□ -2.27
SWI4	YER111C	MSW1	P04803	379 aa		0.87	□□□□□ -2.27
SWI4	YER111C	QCR2	P07257	368 aa		0.87	□□□□□ -2.27
SWI4	YER111C	PET9	P18239	318 aa	Known RBP	0.87	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 47.8 ms