RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	ARG80	P07249	177 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	RPL23A	P0CX41	137 aa	Known RBP	3.21	□□□□□ -1.9
UBX5	YDR330W	RPL23B	P0CX42	137 aa	Known RBP	3.21	□□□□□ -1.9
UBX5	YDR330W	MATALPHA1	P0CY06	175 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	HMLALPHA1	P0CY07	175 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	STE18	P18852	110 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	PPA2	P28239	310 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	EHD3	P28817	500 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	LSM12	P38828	187 aa	Known RBP	3.21	□□□□□ -1.9
UBX5	YDR330W	SYS1	P41544	203 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	YLR152C	P54072	576 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	BUD25	P85052	153 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	YPL080C	Q02826	108 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	VBA1	Q04301	562 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	IRC19	Q07843	230 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	MIM1	Q08176	113 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	YRA1	Q12159	226 aa	Known RBP	3.21	□□□□□ -1.9
UBX5	YDR330W	ATG31	Q12421	196 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	YIL046W-A	Q3E7Z4	54 aa		3.21	□□□□□ -1.9
UBX5	YDR330W	FAS1	P07149	2051 aa	Known RBP	3.21	□□□□□ -1.9
UBX5	YDR330W	POL2	P21951	2222 aa	Known RBP	3.21	□□□□□ -1.9
UBX5	YDR330W	TDH2	P00358	332 aa	Known RBP	3.2	□□□□□ -1.9
UBX5	YDR330W	PRB1	P09232	635 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	SEN2	P16658	377 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	SCO1	P23833	295 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	YCR016W	P25617	290 aa	Known RBP	3.2	□□□□□ -1.9
UBX5	YDR330W	NAM9	P27929	486 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	ZRT1	P32804	376 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	YGR042W	P53227	271 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	NRM1	P53718	249 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	PET191	Q02772	108 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	PRM15	Q03262	622 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	YPR147C	Q06522	304 aa	Known RBP	3.2	□□□□□ -1.9
UBX5	YDR330W	PBP4	Q07362	185 aa	Known RBP	3.2	□□□□□ -1.9
UBX5	YDR330W	HEM25	Q07534	307 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	YLR031W	Q07978	186 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	SYC1	Q08553	188 aa	Predicted RBP	3.2	□□□□□ -1.9
UBX5	YDR330W	YOR385W	Q08909	290 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	YGL194C-A	Q2V2P6	80 aa		3.2	□□□□□ -1.9
UBX5	YDR330W	TDH1	P00360	332 aa	Known RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	PUT1	P09368	476 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	DSF1	P0CX08	502 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	YNR073C	P0CX09	502 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	CTA1	P15202	515 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	MRP17	P28778	131 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	SNC2	P33328	115 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	SWD2	P36104	329 aa	Predicted RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	KRE9	P39005	276 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	PTI1	P39927	425 aa	Predicted RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	DLS1	P40366	167 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	AVT7	P40501	490 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	EGT2	P42835	1041 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	OTU1	P43558	301 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	MRX5	P47007	382 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	GPI14	P47088	403 aa	Known RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	RSM27	P53305	110 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	DID2	P69771	204 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	CTF19	Q02732	369 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	YDR249C	Q03787	373 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	NNT1	Q05874	261 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	BER1	Q06688	274 aa	Known RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	IZH2	Q12442	317 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	ODC2	Q99297	307 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	YAL064W-B	O13512	126 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	MSW1	P04803	379 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	PHO2	P07269	559 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	URA6	P15700	204 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	MIR1	P23641	311 aa	Known RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	CPR3	P25719	182 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	LDS1	P31379	325 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	MRPL27	P36526	146 aa	Predicted RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	FRM2	P37261	193 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	SSH1	P38353	490 aa	Known RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	TIR3	P40552	269 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	CUP9	P41817	306 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	LSM1	P47017	172 aa	Known RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	PGU1	P47180	361 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	BXI1	P48558	297 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	JAC1	P53193	184 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	TIM11	P81449	96 aa	Predicted RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	RDL2	Q08742	149 aa	Known RBP	3.19	□□□□□ -1.9
UBX5	YDR330W	FEX1	Q08913	375 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	FRE8	Q12209	686 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	YMR230W-A	Q3E7B5	62 aa		3.19	□□□□□ -1.9
UBX5	YDR330W	SGA1	P08019	549 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	CAM1	P29547	415 aa	Known RBP	3.18	□□□□□ -1.9
UBX5	YDR330W	COS9	P36034	407 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	YMR144W	P40214	342 aa	Known RBP	3.18	□□□□□ -1.9
UBX5	YDR330W	SWM2	P40342	146 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	MOB2	P43563	287 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	ERJ5	P43613	295 aa	Predicted RBP	3.18	□□□□□ -1.9
UBX5	YDR330W	UBC12	P52491	188 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	CRH1	P53301	507 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	GIM3	P53900	129 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	AAH1	P53909	347 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	YPL039W	Q03080	316 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	CGI121	Q03705	181 aa	Known RBP	3.18	□□□□□ -1.9
UBX5	YDR330W	YML108W	Q03759	105 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	HNT1	Q04344	158 aa	Known RBP	3.18	□□□□□ -1.9
UBX5	YDR330W	FSH2	Q05015	223 aa		3.18	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms