RNA–Protein interactions for RNA: YDL060W

TSR1, Transcript of Protein required for processing of 20S pre-rRNA in the cytoplasm, yeast

Gene TSR1, Length 2,367 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TSR1	YDL060W	YNR034W-A	Q3E841	98 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	SIR2	P06700	562 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	RPL42A	P0CX27	106 aa	Known RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	RPL42B	P0CX28	106 aa	Known RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	SPS100	P13130	326 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	YCR043C	P25361	127 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	YCR090C	P25654	182 aa	Known RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	QRI5	P32344	111 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	SPT4	P32914	102 aa	Predicted RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	CLB6	P32943	380 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	RCK1	P38622	512 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	MTC6	P38849	526 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	YJR012C	P47087	207 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	YAE1	P47118	141 aa	Predicted RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	UBC13	P52490	153 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	ASI3	P53983	676 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	RDL2	Q08742	149 aa	Known RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	RDI1	Q12434	202 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	KIN28	P06242	306 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	RPS25B	P0C0T4	108 aa	Known RBP	3.16	□□□□□ -1.9
TSR1	YDL060W	IDP1	P21954	428 aa	Known RBP	3.16	□□□□□ -1.9
TSR1	YDL060W	MRP17	P28778	131 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	PEX4	P29340	183 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	PHO88	P38264	188 aa	Predicted RBP	3.16	□□□□□ -1.9
TSR1	YDL060W	SUR2	P38992	349 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	AZF1	P41696	914 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	SOL1	P50278	321 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	MPA43	P53583	542 aa	Predicted RBP	3.16	□□□□□ -1.9
TSR1	YDL060W	YNR066C	P53752	436 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	PIR3	Q03180	325 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	YMR181C	Q03231	154 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	INP1	Q03694	420 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	RPS25A	Q3E792	108 aa	Predicted RBP	3.16	□□□□□ -1.9
TSR1	YDL060W	ERD1	P16151	362 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	CDC39	P25655	2108 aa	Known RBP	3.16	□□□□□ -1.9
TSR1	YDL060W	HMT1	P38074	348 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	POP7	P38291	140 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	SDS24	P38314	527 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	GCV3	P39726	170 aa	Predicted RBP	3.16	□□□□□ -1.9
TSR1	YDL060W	OST3	P48439	350 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	VHT1	P53241	593 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	BUD25	P85052	153 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	YPR064W	Q12492	139 aa		3.16	□□□□□ -1.9
TSR1	YDL060W	NOP1	P15646	327 aa	Known RBP	3.15	□□□□□ -1.9
TSR1	YDL060W	RIB5	P38145	238 aa		3.15	□□□□□ -1.9
TSR1	YDL060W	ADO1	P47143	340 aa	Known RBP	3.15	□□□□□ -1.9
TSR1	YDL060W	NUP57	P48837	541 aa		3.15	□□□□□ -1.9
TSR1	YDL060W	SME1	Q12330	94 aa	Predicted RBP	3.15	□□□□□ -1.9
TSR1	YDL060W	YLR099W-A	Q3E798	87 aa		3.15	□□□□□ -1.9
TSR1	YDL060W	GLN3	P18494	730 aa		3.15	□□□□□ -1.91
TSR1	YDL060W	AGA1	P32323	725 aa		3.15	□□□□□ -1.91
TSR1	YDL060W	YJR149W	P47177	404 aa		3.15	□□□□□ -1.91
TSR1	YDL060W	GTR2	P53290	341 aa		3.15	□□□□□ -1.91
TSR1	YDL060W	YIP3	P53633	176 aa		3.15	□□□□□ -1.91
TSR1	YDL060W	CTF19	Q02732	369 aa		3.15	□□□□□ -1.91
TSR1	YDL060W	HPT1	Q04178	221 aa	Known RBP	3.15	□□□□□ -1.91
TSR1	YDL060W	ARC18	Q05933	178 aa	Known RBP	3.15	□□□□□ -1.91
TSR1	YDL060W	PER33	Q12144	273 aa		3.15	□□□□□ -1.91
TSR1	YDL060W	FRE8	Q12209	686 aa		3.15	□□□□□ -1.91
TSR1	YDL060W	YCT1	Q12235	531 aa		3.15	□□□□□ -1.91
TSR1	YDL060W	COX5A	P00424	153 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	RAS2	P01120	322 aa	Known RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	DDI2	P0CH63	225 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	DDI3	P0CH64	225 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	PRE7	P23724	241 aa	Known RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	YCR099C	P25657	155 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	OAC1	P32332	324 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	RRP3	P38712	501 aa	Known RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	YEL028W	P39989	153 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	FLX1	P40464	311 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	OST1	P41543	476 aa	Known RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	UFE1	P41834	346 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	CIN2	P46670	268 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	IKS1	P47042	667 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	BNS1	P50084	137 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	MGA1	P53050	456 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	ALG13	P53178	202 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	AAH1	P53909	347 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	YDC1	Q02896	317 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	YDR248C	Q03786	193 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	CUE4	Q04201	117 aa	Predicted RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	LDB18	Q07887	179 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	IES4	Q08561	116 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	ATG5	Q12380	294 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	RPL20A	P0CX23	172 aa	Known RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	RPL20B	P0CX24	172 aa	Predicted RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	CPR1	P14832	162 aa	Known RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	RPL16A	P26784	199 aa	Known RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	SFK1	P35735	353 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	MRPL15	P36523	253 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	YBR220C	P38318	560 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	CUE1	P38428	203 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	YFR057W	P43625	151 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	SLX9	P53251	210 aa	Predicted RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	SSU72	P53538	206 aa	Predicted RBP	3.14	□□□□□ -1.91
TSR1	YDL060W	IBD2	P53892	351 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	IGO1	P53897	168 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	CWC27	Q02770	301 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	FRQ1	Q06389	190 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	YPR147C	Q06522	304 aa	Known RBP	3.14	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 36.2 ms