RNA–Protein interactions for RNA: YDL042C

SIR2, Transcript of Conserved NAD+ dependent histone deacetylase of the Sirtuin family, yeast

Gene SIR2, Length 1,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIR2	YDL042C	RPL26B	P53221	127 aa	Known RBP	3.66	□□□□□ -1.82
SIR2	YDL042C	RSM10	Q03201	203 aa		3.66	□□□□□ -1.82
SIR2	YDL042C	BBP1	Q12365	385 aa		3.66	□□□□□ -1.82
SIR2	YDL042C	YMR144W	P40214	342 aa	Known RBP	3.65	□□□□□ -1.82
SIR2	YDL042C	OST2	P46964	130 aa		3.65	□□□□□ -1.82
SIR2	YDL042C	BOL2	P53082	120 aa		3.65	□□□□□ -1.82
SIR2	YDL042C	CAB4	P53332	305 aa		3.65	□□□□□ -1.82
SIR2	YDL042C	PEX12	Q04370	399 aa		3.65	□□□□□ -1.82
SIR2	YDL042C	ATG38	Q05789	226 aa	Known RBP	3.65	□□□□□ -1.82
SIR2	YDL042C	YIL046W-A	Q3E7Z4	54 aa		3.65	□□□□□ -1.82
SIR2	YDL042C	NTG1	P31378	399 aa		3.65	□□□□□ -1.83
SIR2	YDL042C	VPS21	P36017	210 aa	Known RBP	3.65	□□□□□ -1.83
SIR2	YDL042C	MSA2	P36157	363 aa		3.65	□□□□□ -1.83
SIR2	YDL042C	RAD17	P48581	401 aa		3.65	□□□□□ -1.83
SIR2	YDL042C	RUD3	Q12234	484 aa	Known RBP	3.65	□□□□□ -1.83
SIR2	YDL042C	SAS5	Q99314	248 aa		3.65	□□□□□ -1.83
SIR2	YDL042C	CUP1-1	P0CX80	61 aa		3.64	□□□□□ -1.83
SIR2	YDL042C	CUP1-2	P0CX81	61 aa		3.64	□□□□□ -1.83
SIR2	YDL042C	MGM101	P32787	269 aa	Known RBP	3.64	□□□□□ -1.83
SIR2	YDL042C	PTM1	P32857	523 aa		3.64	□□□□□ -1.83
SIR2	YDL042C	ARC19	P33204	171 aa	Known RBP	3.64	□□□□□ -1.83
SIR2	YDL042C	COS8	P38723	381 aa		3.64	□□□□□ -1.83
SIR2	YDL042C	GIM4	P40005	111 aa	Known RBP	3.64	□□□□□ -1.83
SIR2	YDL042C	PEP8	P40335	379 aa		3.64	□□□□□ -1.83
SIR2	YDL042C	YJR146W	P47174	117 aa		3.64	□□□□□ -1.83
SIR2	YDL042C	YGL159W	P53110	370 aa		3.64	□□□□□ -1.83
SIR2	YDL042C	FAR8	Q05040	523 aa		3.64	□□□□□ -1.83
SIR2	YDL042C	GCN1	P33892	2672 aa	Known RBP	3.63	□□□□□ -1.83
SIR2	YDL042C	RHO1	P06780	209 aa	Known RBP	3.63	□□□□□ -1.83
SIR2	YDL042C	YBR032W	P38223	100 aa		3.63	□□□□□ -1.83
SIR2	YDL042C	YLR030W	Q07967	263 aa		3.63	□□□□□ -1.83
SIR2	YDL042C	STT4	P37297	1900 aa		3.63	□□□□□ -1.83
SIR2	YDL042C	BRR2	P32639	2163 aa	Known RBP	3.63	□□□□□ -1.83
SIR2	YDL042C	MDM35	O60200	86 aa		3.62	□□□□□ -1.83
SIR2	YDL042C	SPT3	P06844	337 aa		3.62	□□□□□ -1.83
SIR2	YDL042C	ERD2	P18414	219 aa		3.62	□□□□□ -1.83
SIR2	YDL042C	YER034W	P40022	185 aa	Known RBP	3.62	□□□□□ -1.83
SIR2	YDL042C	DSK2	P48510	373 aa		3.62	□□□□□ -1.83
SIR2	YDL042C	CSN9	Q03981	162 aa		3.62	□□□□□ -1.83
SIR2	YDL042C	IPP1	P00817	287 aa	Known RBP	3.62	□□□□□ -1.83
SIR2	YDL042C	RPB4	P20433	221 aa	Predicted RBP	3.62	□□□□□ -1.83
SIR2	YDL042C	RPL24B	P24000	155 aa	Known RBP	3.62	□□□□□ -1.83
SIR2	YDL042C	YCR090C	P25654	182 aa	Known RBP	3.62	□□□□□ -1.83
SIR2	YDL042C	PPA2	P28239	310 aa		3.62	□□□□□ -1.83
SIR2	YDL042C	ERG24	P32462	438 aa	Known RBP	3.62	□□□□□ -1.83
SIR2	YDL042C	CLB6	P32943	380 aa		3.62	□□□□□ -1.83
SIR2	YDL042C	GAS3	Q03655	524 aa		3.62	□□□□□ -1.83
SIR2	YDL042C	YLR053C	Q12026	108 aa		3.62	□□□□□ -1.83
SIR2	YDL042C	CDC10	P25342	322 aa	Known RBP	3.61	□□□□□ -1.83
SIR2	YDL042C	OTU1	P43558	301 aa		3.61	□□□□□ -1.83
SIR2	YDL042C	YJR149W	P47177	404 aa		3.61	□□□□□ -1.83
SIR2	YDL042C	TRM9	P49957	279 aa		3.61	□□□□□ -1.83
SIR2	YDL042C	RCF2	P53721	224 aa		3.61	□□□□□ -1.83
SIR2	YDL042C	NHP10	Q03435	203 aa		3.61	□□□□□ -1.83
SIR2	YDL042C	DCR2	Q05924	578 aa		3.61	□□□□□ -1.83
SIR2	YDL042C	MSA1	Q08471	629 aa		3.61	□□□□□ -1.83
SIR2	YDL042C	VMA6	P32366	345 aa	Known RBP	3.6	□□□□□ -1.83
SIR2	YDL042C	GCN20	P43535	752 aa	Known RBP	3.6	□□□□□ -1.83
SIR2	YDL042C	MCM22	P47167	239 aa		3.6	□□□□□ -1.83
SIR2	YDL042C	AIF1	P52923	378 aa		3.6	□□□□□ -1.83
SIR2	YDL042C	SLM2	P53955	656 aa		3.6	□□□□□ -1.83
SIR2	YDL042C	HPT1	Q04178	221 aa	Known RBP	3.6	□□□□□ -1.83
SIR2	YDL042C	MHT1	Q12525	324 aa		3.6	□□□□□ -1.83
SIR2	YDL042C	YKL068W-A	Q3E826	78 aa		3.6	□□□□□ -1.83
SIR2	YDL042C	THP2	O13539	261 aa	Known RBP	3.59	□□□□□ -1.83
SIR2	YDL042C	NTF2	P33331	125 aa	Known RBP	3.59	□□□□□ -1.83
SIR2	YDL042C	COX15	P40086	486 aa		3.59	□□□□□ -1.83
SIR2	YDL042C	ARC15	P40518	154 aa	RIP-Chip data	3.59	□□□□□ -1.83	not detected
SIR2	YDL042C	YPL229W	Q99395	206 aa		3.59	□□□□□ -1.83
SIR2	YDL042C	CCA1	P21269	546 aa		3.59	□□□□□ -1.84
SIR2	YDL042C	RPS1A	P33442	255 aa	Known RBP	3.59	□□□□□ -1.84
SIR2	YDL042C	RMR1	P53060	241 aa		3.59	□□□□□ -1.84
SIR2	YDL042C	GTR2	P53290	341 aa		3.59	□□□□□ -1.84
SIR2	YDL042C	YPL257W	Q08974	193 aa		3.59	□□□□□ -1.84
SIR2	YDL042C	ADF1	Q2V2Q1	113 aa		3.59	□□□□□ -1.84
SIR2	YDL042C	YBR056W-A	I2HB52	66 aa		3.58	□□□□□ -1.84
SIR2	YDL042C	TAF14	P35189	244 aa		3.58	□□□□□ -1.84
SIR2	YDL042C	MIC12	P38341	106 aa		3.58	□□□□□ -1.84
SIR2	YDL042C	YIL086C	P40503	102 aa		3.58	□□□□□ -1.84
SIR2	YDL042C	MRPL49	P40858	161 aa	Predicted RBP	3.58	□□□□□ -1.84
SIR2	YDL042C	MSS2	P40990	351 aa		3.58	□□□□□ -1.84
SIR2	YDL042C	EFM5	P53200	248 aa	Known RBP	3.58	□□□□□ -1.84
SIR2	YDL042C	GIM3	P53900	129 aa		3.58	□□□□□ -1.84
SIR2	YDL042C	RGM1	Q00453	211 aa		3.58	□□□□□ -1.84
SIR2	YDL042C	HTL1	Q9URQ5	78 aa		3.58	□□□□□ -1.84
SIR2	YDL042C	Q0255	P03881	472 aa		3.57	□□□□□ -1.84
SIR2	YDL042C	BCY1	P07278	416 aa	Known RBP	3.57	□□□□□ -1.84
SIR2	YDL042C	DSF1	P0CX08	502 aa		3.57	□□□□□ -1.84
SIR2	YDL042C	YNR073C	P0CX09	502 aa		3.57	□□□□□ -1.84
SIR2	YDL042C	TRX3	P25372	127 aa		3.57	□□□□□ -1.84
SIR2	YDL042C	ADE1	P27616	306 aa		3.57	□□□□□ -1.84
SIR2	YDL042C	SCM4	P32564	187 aa		3.57	□□□□□ -1.84
SIR2	YDL042C	DOA4	P32571	926 aa		3.57	□□□□□ -1.84
SIR2	YDL042C	ILM1	P47155	203 aa		3.57	□□□□□ -1.84
SIR2	YDL042C	NSA1	P53136	463 aa	Predicted RBP	3.57	□□□□□ -1.84
SIR2	YDL042C	IGO1	P53897	168 aa		3.57	□□□□□ -1.84
SIR2	YDL042C	LSM3	P57743	89 aa	Known RBP	3.57	□□□□□ -1.84
SIR2	YDL042C	YHR125W	P38831	101 aa		3.56	□□□□□ -1.84
SIR2	YDL042C	PRE6	P40303	254 aa	Known RBP	3.56	□□□□□ -1.84
SIR2	YDL042C	APQ12	P40532	138 aa		3.56	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 26.2 ms