RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 LRRC3CA6NJW4 275 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 ALDH1A2O94788 518 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 ZBED1O96006 694 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 HRGP04196 525 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 JUNP05412 331 aaKnown RBP4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 IGKV2-30P06310 120 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 EDNRBP24530 442 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 KIR2DL3P43628 341 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 CDC42EP1Q00587 391 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 GUCY1B3Q02153 619 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 FHL1Q13642 323 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 UBE4AQ14139 1066 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 GRM3Q14832 879 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 UBE3CQ15386 1083 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 C3orf36Q3SXR2 165 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 MAP9Q49MG5 647 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 PPP4R4Q6NUP7 873 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 KSR2Q6VAB6 950 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 CHST15Q7LFX5 561 aaPredicted RBP4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 DRC7Q8IY82 874 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 ZBTB34Q8NCN2 500 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 PDPRQ8NCN5 879 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 PIK3C3Q8NEB9 887 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 OR7D4Q8NG98 312 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 HOXB13Q92826 284 aaPredicted RBP4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 RGMAQ96B86 450 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 FAM167AQ96KS9 214 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 NELL2Q99435 816 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 ACO2Q99798 780 aaKnown RBP4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 TMEM60Q9H2L4 133 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 TDP1Q9NUW8 608 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 ZNF580Q9UK33 172 aa4.72□□□□□ -1.65
SMCHD1-209ENST00000583441 ANO9A1A5B4 782 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 TEX33O43247 280 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 NCR1O76036 304 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 MAP4K4O95819 1239 aaPredicted RBP4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 NBPF7P0C2Y1 421 aaPredicted RBP4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 VSIG10L2P0DP72 767 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 NPEPPSP55786 919 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 PER3P56645 1201 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 FAM193AP78312 1265 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 RAB39AQ14964 217 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 ABHD17BQ5VST6 288 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 PDZD4Q76G19 769 aaPredicted RBP4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 RHOT1Q8IXI2 618 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 NSUN6Q8TEA1 469 aaKnown RBP4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 MTFMTQ96DP5 389 aaKnown RBP4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 CDK5RAP3Q96JB5 506 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 UHRF1Q96T88 793 aaPredicted RBP4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 DDX21Q9NR30 783 aaKnown RBP eCLIP4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 LANCL2Q9NS86 450 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 SLC52A1Q9NWF4 448 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 CALCOCO1Q9P1Z2 691 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 STXBP5LQ9Y2K9 1186 aa4.71□□□□□ -1.66
SMCHD1-209ENST00000583441 TUSC2O75896 110 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 TOX4O94842 621 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 UBXN7O94888 489 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 FTLP02792 175 aaPredicted RBP4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 KRT10P13645 584 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 RHCEP18577 417 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 TKTP29401 623 aaKnown RBP4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 MPLP40238 635 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 PTTG1IPP53801 180 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 CACNB3P54284 484 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 RHDQ02161 417 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 DUSP2Q05923 314 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 PICALMQ13492 652 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 BRD3Q15059 726 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 SAFBQ15424 915 aaKnown RBP eCLIP4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 ATP2B3Q16720 1220 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 ABHD15Q6UXT9 468 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 OVCH2Q7RTZ1 564 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 RSPH3Q86UC2 560 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 LILRA3Q8N6C8 439 aaPredicted RBP4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 SAMD3Q8N6K7 520 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 C3orf20Q8ND61 904 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 PJA1Q8NG27 643 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 CASKIN2Q8WXE0 1202 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 DPF2Q92785 391 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 TIFAQ96CG3 184 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 TMEM140Q9NV12 185 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 GPRC5DQ9NZD1 345 aa4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 DDX20Q9UHI6 824 aaKnown RBP4.7□□□□□ -1.66
SMCHD1-209ENST00000583441 GAGE12BA1L429 117 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 GAGE12HA6NDE8 117 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 TPP1O14773 563 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 C1QL1O75973 258 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 IL2RBP14784 551 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 HTR1BP28222 390 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 ADSLP30566 484 aaPredicted RBP4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 BMPR1AP36894 532 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 FXR1P51114 621 aaKnown RBP eCLIP4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 OCA2Q04671 838 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 OS9Q13438 667 aaPredicted RBP4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 IL10RAQ13651 578 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 SEPT2Q15019 361 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 KRTAP27-1Q3LI81 207 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 ANO6Q4KMQ2 910 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 CCDC157Q569K6 752 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 ZNF517Q6ZMY9 492 aaPredicted RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms