RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 AEBP2Q6ZN18 517 aaPredicted RBP30.89■■■□□ 2.54
SMCHD1-209ENST00000583441 CHIC1Q5VXU3 224 aa28.97■■■□□ 2.23
SMCHD1-209ENST00000583441 SENP3Q9H4L4 574 aaPredicted RBP26.56■■□□□ 1.84
SMCHD1-209ENST00000583441 PHF23Q9BUL5 403 aaPredicted RBP26.09■■□□□ 1.77
SMCHD1-209ENST00000583441 FOXD1Q16676 465 aa24.81■■□□□ 1.56
SMCHD1-209ENST00000583441 POTEDQ86YR6 584 aa24.31■■□□□ 1.48
SMCHD1-209ENST00000583441 MSH5O43196 834 aa23.58■■□□□ 1.37
SMCHD1-209ENST00000583441 PIAS4Q8N2W9 510 aaPredicted RBP23.04■■□□□ 1.28
SMCHD1-209ENST00000583441 PPP6R1Q9UPN7 881 aa22.57■■□□□ 1.2
SMCHD1-209ENST00000583441 PLPPR3Q6T4P5 718 aa22.55■■□□□ 1.2
SMCHD1-209ENST00000583441 ADRA2BP18089 450 aa22.49■■□□□ 1.19
SMCHD1-209ENST00000583441 DMRT2Q9Y5R5 561 aa20.9■□□□□ 0.94
SMCHD1-209ENST00000583441 MAPK8IP2Q13387 824 aaPredicted RBP20.89■□□□□ 0.93
SMCHD1-209ENST00000583441 CACNB1Q02641 598 aaPredicted RBP20.75■□□□□ 0.91
SMCHD1-209ENST00000583441 SCAF1Q9H7N4 1312 aaKnown RBP20.66■□□□□ 0.9
SMCHD1-209ENST00000583441 DCAF8L1A6NGE4 600 aa20.21■□□□□ 0.83
SMCHD1-209ENST00000583441 RNF39Q9H2S5 420 aa19.99■□□□□ 0.79
SMCHD1-209ENST00000583441 HOXD11P31277 338 aaPredicted RBP19.81■□□□□ 0.76
SMCHD1-209ENST00000583441 C1QBPQ07021 282 aaKnown RBP19.7■□□□□ 0.74
SMCHD1-209ENST00000583441 PPP4R3CPQ6ZMV5 832 aa19.66■□□□□ 0.74
SMCHD1-209ENST00000583441 CNKSR2Q8WXI2 1034 aa19.48■□□□□ 0.71
SMCHD1-209ENST00000583441 RNF216Q9NWF9 866 aaPredicted RBP19.48■□□□□ 0.71
SMCHD1-209ENST00000583441 DNAJC5BQ9UF47 199 aa19.28■□□□□ 0.68
SMCHD1-209ENST00000583441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.98■□□□□ 0.63
SMCHD1-209ENST00000583441 POTEHQ6S545 545 aa18.92■□□□□ 0.62
SMCHD1-209ENST00000583441 NCBP3Q53F19 620 aaKnown RBP18.72■□□□□ 0.59
SMCHD1-209ENST00000583441 CAPN15O75808 1086 aa18.47■□□□□ 0.55
SMCHD1-209ENST00000583441 DSG3P32926 999 aa18.47■□□□□ 0.55
SMCHD1-209ENST00000583441 U3KPZ7 1027 aaPredicted RBP18.39■□□□□ 0.53
SMCHD1-209ENST00000583441 SPINK5Q9NQ38 1064 aaPredicted RBP18.38■□□□□ 0.53
SMCHD1-209ENST00000583441 NPM3O75607 178 aaKnown RBP18.36■□□□□ 0.53
SMCHD1-209ENST00000583441 TRHP20396 242 aaPredicted RBP17.98■□□□□ 0.47
SMCHD1-209ENST00000583441 ABCB7O75027 752 aa17.94■□□□□ 0.46
SMCHD1-209ENST00000583441 APLP2Q06481 763 aa17.92■□□□□ 0.46
SMCHD1-209ENST00000583441 ZNF219Q9P2Y4 722 aaPredicted RBP17.89■□□□□ 0.45
SMCHD1-209ENST00000583441 SLC4A2P04920 1241 aa17.71■□□□□ 0.43
SMCHD1-209ENST00000583441 RBM42Q9BTD8 480 aaKnown RBP17.71■□□□□ 0.43
SMCHD1-209ENST00000583441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.69■□□□□ 0.42
SMCHD1-209ENST00000583441 HNRNPUL2Q1KMD3 747 aaKnown RBP17.69■□□□□ 0.42
SMCHD1-209ENST00000583441 CHRDL2Q6WN34 429 aa17.6■□□□□ 0.41
SMCHD1-209ENST00000583441 SAMD1Q6SPF0 538 aaPredicted RBP17.53■□□□□ 0.4
SMCHD1-209ENST00000583441 SP7Q8TDD2 431 aaPredicted RBP17.37■□□□□ 0.37
SMCHD1-209ENST00000583441 KCNA4P22459 653 aa17.31■□□□□ 0.36
SMCHD1-209ENST00000583441 POLA2Q14181 598 aa17.29■□□□□ 0.36
SMCHD1-209ENST00000583441 AKT1S1Q96B36 256 aa17.11■□□□□ 0.33
SMCHD1-209ENST00000583441 MYCNP04198 464 aaPredicted RBP17.04■□□□□ 0.32
SMCHD1-209ENST00000583441 PIP4P2Q8N4L2 257 aa17■□□□□ 0.31
SMCHD1-209ENST00000583441 HAX1O00165 279 aa16.98■□□□□ 0.31
SMCHD1-209ENST00000583441 REM2Q8IYK8 340 aaPredicted RBP16.93■□□□□ 0.3
SMCHD1-209ENST00000583441 ZBTB12Q9Y330 459 aaPredicted RBP16.9■□□□□ 0.3
SMCHD1-209ENST00000583441 FXR2P51116 673 aaKnown RBP eCLIP16.76■□□□□ 0.27
SMCHD1-209ENST00000583441 PITPNM1O00562 1244 aa16.75■□□□□ 0.27
SMCHD1-209ENST00000583441 OSCARQ8IYS5 282 aa16.74■□□□□ 0.27
SMCHD1-209ENST00000583441 ATF5Q9Y2D1 282 aaPredicted RBP16.65■□□□□ 0.26
SMCHD1-209ENST00000583441 EVX2Q03828 476 aa16.6■□□□□ 0.25
SMCHD1-209ENST00000583441 FOXD4L1Q9NU39 408 aa16.43■□□□□ 0.22
SMCHD1-209ENST00000583441 PRKAR2AP13861 404 aaKnown RBP16.35■□□□□ 0.21
SMCHD1-209ENST00000583441 LHX8Q68G74 356 aa16.3■□□□□ 0.2
SMCHD1-209ENST00000583441 SPDYE2BA6NHP3 402 aa16.29■□□□□ 0.2
SMCHD1-209ENST00000583441 SPDYE6P0CI01 402 aa16.29■□□□□ 0.2
SMCHD1-209ENST00000583441 SPDYE2Q495Y8 402 aa16.29■□□□□ 0.2
SMCHD1-209ENST00000583441 CLEC11AQ9Y240 323 aa16.27■□□□□ 0.2
SMCHD1-209ENST00000583441 C19orf67A6NJJ6 358 aa16.25■□□□□ 0.19
SMCHD1-209ENST00000583441 GABBR2O75899 941 aa16.23■□□□□ 0.19
SMCHD1-209ENST00000583441 SLC4A1APQ9BWU0 796 aaKnown RBP16.23■□□□□ 0.19
SMCHD1-209ENST00000583441 SPDYE1Q8NFV5 336 aaPredicted RBP16.22■□□□□ 0.19
SMCHD1-209ENST00000583441 FBLN2P98095 1184 aa16.17■□□□□ 0.18
SMCHD1-209ENST00000583441 ZNF692Q9BU19 519 aaPredicted RBP16■□□□□ 0.15
SMCHD1-209ENST00000583441 ATXN8OSP0DMR3 200 aa15.99■□□□□ 0.15
SMCHD1-209ENST00000583441 CHADLQ6NUI6 762 aa15.98■□□□□ 0.15
SMCHD1-209ENST00000583441 PLSCR2Q9NRY7 297 aa15.98■□□□□ 0.15
SMCHD1-209ENST00000583441 SSUH2Q9Y2M2 353 aa15.92■□□□□ 0.14
SMCHD1-209ENST00000583441 PRR29P0C7W0 189 aa15.88■□□□□ 0.13
SMCHD1-209ENST00000583441 ZBTB22O15209 634 aa15.84■□□□□ 0.13
SMCHD1-209ENST00000583441 MKRN4PQ13434 485 aaPredicted RBP15.83■□□□□ 0.12
SMCHD1-209ENST00000583441 POTEIP0CG38 1075 aa15.82■□□□□ 0.12
SMCHD1-209ENST00000583441 CD44P16070 742 aaKnown RBP15.78■□□□□ 0.12
SMCHD1-209ENST00000583441 CLCN6P51797 869 aa15.74■□□□□ 0.11
SMCHD1-209ENST00000583441 PABPN1Q86U42 306 aaKnown RBP eCLIP15.71■□□□□ 0.11
SMCHD1-209ENST00000583441 DCBLD2Q96PD2 775 aa15.7■□□□□ 0.1
SMCHD1-209ENST00000583441 FARP1Q9Y4F1 1045 aaPredicted RBP15.66■□□□□ 0.1
SMCHD1-209ENST00000583441 ZNF579Q8NAF0 562 aaKnown RBP15.46■□□□□ 0.07
SMCHD1-209ENST00000583441 ZRANB1Q9UGI0 708 aa15.46■□□□□ 0.07
SMCHD1-209ENST00000583441 OTUD5Q96G74 571 aa15.42■□□□□ 0.06
SMCHD1-209ENST00000583441 POTEMA6NI47 508 aa15.39■□□□□ 0.05
SMCHD1-209ENST00000583441 GALR2O43603 387 aaPredicted RBP15.34■□□□□ 0.05
SMCHD1-209ENST00000583441 POTEGQ6S5H5 508 aa15.32■□□□□ 0.04
SMCHD1-209ENST00000583441 POTEB2H3BUK9 544 aa15.29■□□□□ 0.04
SMCHD1-209ENST00000583441 PAK3O75914 559 aaPredicted RBP15.21■□□□□ 0.03
SMCHD1-209ENST00000583441 CREBZFQ9NS37 354 aa15.21■□□□□ 0.03
SMCHD1-209ENST00000583441 PCDH10Q9P2E7 1040 aa15.2■□□□□ 0.02
SMCHD1-209ENST00000583441 STAG3Q9UJ98 1225 aa15.15■□□□□ 0.02
SMCHD1-209ENST00000583441 PHF12Q96QT6 1004 aa15.13■□□□□ 0.01
SMCHD1-209ENST00000583441 PELP1Q8IZL8 1130 aaKnown RBP15.09■□□□□ 0.01
SMCHD1-209ENST00000583441 METRNQ9UJH8 293 aa15.03■□□□□ -0
SMCHD1-209ENST00000583441 MAMSTRQ6ZN01 415 aa15.01□□□□□ -0.01
SMCHD1-209ENST00000583441 NPM1P06748 294 aaKnown RBP eCLIP15□□□□□ -0.01
SMCHD1-209ENST00000583441 SLC39A7Q92504 469 aa14.99□□□□□ -0.01
SMCHD1-209ENST00000583441 C7P10643 843 aa14.98□□□□□ -0.01
SMCHD1-209ENST00000583441 ASTLQ6HA08 431 aaPredicted RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms