RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-223ENST00000543658 ITIH6Q6UXX5 1313 aa12.77□□□□□ -0.37
DDB1-223ENST00000543658 PDE4DIPQ5VU43 2346 aa12.77□□□□□ -0.37
DDB1-223ENST00000543658 PLXNA4Q9HCM2 1894 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.76□□□□□ -0.37
DDB1-223ENST00000543658 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.76□□□□□ -0.37
DDB1-223ENST00000543658 KPNA7A9QM74 516 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 TMEM189-UBE2V1I3L0A0 370 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 NRP1O14786 923 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 HUS1O60921 280 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 ODC1P11926 461 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 BMP8BP34820 402 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 PPM1AP35813 382 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 SLC11A1P49279 550 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 BCAR1P56945 870 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 KCNMA1Q12791 1236 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 ELAVL2Q12926 359 aaKnown RBP12.76□□□□□ -0.37
DDB1-223ENST00000543658 PTPN21Q16825 1174 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 SPOPLQ6IQ16 392 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 ENOSF1Q7L5Y1 443 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 VSTM4Q8IW00 320 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 TDHQ8IZJ6 230 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 RABGGTAQ92696 567 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 TMEM169Q96HH4 297 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 CWH43Q9H720 699 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 VRTNQ9H8Y1 702 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 CEP72Q9P209 647 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 CACNG4Q9UBN1 327 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 MSRAQ9UJ68 235 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 ADAM28Q9UKQ2 775 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 SIK3Q9Y2K2 1263 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 SNX9Q9Y5X1 595 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 MRPL42Q9Y6G3 142 aaKnown RBP12.76□□□□□ -0.37
DDB1-223ENST00000543658 SF3B1O75533 1304 aaKnown RBP eCLIP12.76□□□□□ -0.375e-6■■■■■ 72.7
DDB1-223ENST00000543658 VWA8A3KMH1 1905 aa12.76□□□□□ -0.37
DDB1-223ENST00000543658 PPEF2O14830 753 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 CEP290O15078 2479 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 KIF4AO95239 1232 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 GALTP07902 379 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 KLK7P49862 253 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 RABGGTBP53611 331 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 LILRA4P59901 499 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 POLR2FP61218 127 aaKnown RBP12.75□□□□□ -0.37
DDB1-223ENST00000543658 RAB30Q15771 203 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 KLHDC7AQ5VTJ3 777 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 KCNT2Q6UVM3 1135 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 CHRDL2Q6WN34 429 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 METTL23Q86XA0 190 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 FMNL3Q8IVF7 1028 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 TMEM130Q8N3G9 435 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 COLGALT1Q8NBJ5 622 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 APPL2Q8NEU8 664 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 FAXDC2Q96IV6 333 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 PAAF1Q9BRP4 392 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 UBE2TQ9NPD8 197 aaPredicted RBP12.75□□□□□ -0.37
DDB1-223ENST00000543658 HCSTQ9UBK5 93 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 DSEQ9UL01 958 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 PCDHA11Q9Y5I1 949 aa12.75□□□□□ -0.37
DDB1-223ENST00000543658 NT5C1B-RDH14C9J2C7 533 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 CYB561D2O14569 222 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 UCHL3P15374 230 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 CTNNB1P35222 781 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 PBX1P40424 430 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 GCNT1Q02742 428 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 CUL2Q13617 745 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 ARHGAP44Q17R89 818 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 TSR1Q2NL82 804 aaKnown RBP12.74□□□□□ -0.37
DDB1-223ENST00000543658 FIGNQ5HY92 759 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 FUT10Q6P4F1 479 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 RRAGAQ7L523 313 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 ARHGEF19Q8IW93 802 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 TTC39CQ8N584 583 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 SPC24Q8NBT2 197 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 LMO3Q8TAP4 145 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 CXorf38Q8TB03 319 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 SP7Q8TDD2 431 aaPredicted RBP12.74□□□□□ -0.37
DDB1-223ENST00000543658 XYLT2Q9H1B5 865 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 GANQ9H2C0 597 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 CYP3A43Q9HB55 503 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 APOBEC3GQ9HC16 384 aaKnown RBP12.74□□□□□ -0.37
DDB1-223ENST00000543658 NLRC4Q9NPP4 1024 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 GDAP2Q9NXN4 497 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 SPG21Q9NZD8 308 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 STK39Q9UEW8 545 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 FBXL5Q9UKA1 691 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 DNAJC12Q9UKB3 198 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 POLIQ9UNA4 740 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 FHOD1Q9Y613 1164 aa12.74□□□□□ -0.37
DDB1-223ENST00000543658 B4GALT3O60512 393 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 LRRN2O75325 713 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 CD58P19256 250 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 PBX3P40426 434 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 USP8P40818 1118 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 BRCC3P46736 316 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 KRT17Q04695 432 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 IQCEQ6IPM2 695 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 PHLDB3Q6NSJ2 640 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 GJB7Q6PEY0 223 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 DPH6Q7L8W6 267 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 ADGRF2Q8IZF7 708 aa12.73□□□□□ -0.37
DDB1-223ENST00000543658 TMEM86AQ8N2M4 240 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms