RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 HMX1Q9NP08 348 aaPredicted RBP8.93□□□□□ -0.98
USP54-203ENST00000418501 SQORQ9Y6N5 450 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 MBLAC1A4D2B0 266 aaPredicted RBP8.93□□□□□ -0.98
USP54-203ENST00000418501 CARNS1A5YM72 827 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 ITGB3P05106 788 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 CTNNA2P26232 953 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 BFSP2Q13515 415 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 CUL1Q13616 776 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 NAA35Q5VZE5 725 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 DPH6Q7L8W6 267 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 MAP7D3Q8IWC1 876 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 KRT222Q8N1A0 295 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 PXYLP1Q8TE99 480 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 PPP1R16BQ96T49 567 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 CISHQ9NSE2 258 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 OGFRQ9NZT2 677 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 ANAPC7Q9UJX3 599 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 BARX2Q9UMQ3 279 aaPredicted RBP8.93□□□□□ -0.98
USP54-203ENST00000418501 SART1O43290 800 aaKnown RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 CFAP58Q5T655 872 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 KATNBL1Q9H079 304 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 UPF3AQ9H1J1 476 aaKnown RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 SRRDQ9UH36 339 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 MYH9P35579 1960 aaKnown RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 FAM187AA6NFU0 413 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 HSF2BPO75031 334 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 KRT7P08729 469 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 APLP1P51693 650 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 HLTFQ14527 1009 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP54-203ENST00000418501 PRAMEF19Q5SWL8 479 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 GJC2Q5T442 439 aaPredicted RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 PHF13Q86YI8 300 aaPredicted RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 GPIHBP1Q8IV16 184 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 APPL2Q8NEU8 664 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 OSMRQ99650 979 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 PI4K2AQ9BTU6 479 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 APOL6Q9BWW8 343 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 VRTNQ9H8Y1 702 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 PTPRHQ9HD43 1115 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 ASNSD1Q9NWL6 643 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 TRIM10Q9UDY6 481 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 PODXLO00592 558 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 PSTPIP1O43586 416 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 CAPN2P17655 700 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 PURAQ00577 322 aaKnown RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 NFX1Q12986 1120 aaKnown RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 RLFQ13129 1914 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 CALCOCO2Q13137 446 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 DHX34Q14147 1143 aaKnown RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 ACAP1Q15027 740 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 PARP14Q460N5 1801 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 JADE1Q6IE81 842 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 SYDE1Q6ZW31 735 aaPredicted RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 RSRC2Q7L4I2 434 aaKnown RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 NOP9Q86U38 636 aaKnown RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 ZDHHC17Q8IUH5 632 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 SPATA4Q8NEY3 305 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 LNX1Q8TBB1 728 aaPredicted RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 HNRNPLLQ8WVV9 542 aaKnown RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 SEMA4DQ92854 862 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 KREMEN1Q96MU8 473 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 UROC1Q96N76 676 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 FAM193BQ96PV7 902 aaPredicted RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 LHX5Q9H2C1 402 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP54-203ENST00000418501 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP54-203ENST00000418501 DSEQ9UL01 958 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 NUB1Q9Y5A7 615 aa8.92□□□□□ -0.98
USP54-203ENST00000418501 V9GYY5 206 aaPredicted RBP8.92□□□□□ -0.98
USP54-203ENST00000418501 MMEP08473 750 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 CHRNA3P32297 505 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 EPHB4P54760 987 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 PTK7Q13308 1070 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 SNX17Q15036 470 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 EEF1DP3Q658K8 133 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 CYP4F22Q6NT55 531 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 EMBQ6PCB8 327 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 SCARA5Q6ZMJ2 495 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 SLC47A2Q86VL8 602 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 MCOLN2Q8IZK6 566 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 THEM5Q8N1Q8 247 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 LINC01465Q8N7H1 131 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 OR6B3Q8NGW1 331 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 C18orf8Q96DM3 657 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 TMEM176AQ96HP8 235 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 CPB2Q96IY4 423 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 MAK16Q9BXY0 300 aaKnown RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.91□□□□□ -0.98
USP54-203ENST00000418501 HDAC6Q9UBN7 1215 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 GJD2Q9UKL4 321 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 CAPN6Q9Y6Q1 641 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 MYH11P35749 1972 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 UMODL1Q5DID0 1318 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 ZBTB42B2RXF5 422 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 HAS3O00219 553 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 HOXA2O43364 376 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 PARNO95453 639 aaKnown RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 CYBAP13498 195 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 ACTN2P35609 894 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 AMPD2Q01433 879 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms