RNA–Protein interactions for RNA: ENST00000606000.1

CTSA-210, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 644 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-210ENST00000606000 XIRP1Q702N8 1843 aaKnown RBP18.56■□□□□ 0.56
CTSA-210ENST00000606000 ALKQ9UM73 1620 aa18.56■□□□□ 0.56
CTSA-210ENST00000606000 UBAP1LF5GYI3 381 aa18.55■□□□□ 0.56
CTSA-210ENST00000606000 TRPM2O94759 1503 aa18.54■□□□□ 0.56
CTSA-210ENST00000606000 NUTM2DQ5VT03 806 aaPredicted RBP18.54■□□□□ 0.56
CTSA-210ENST00000606000 TRIM52Q96A61 297 aa18.54■□□□□ 0.56
CTSA-210ENST00000606000 SLC26A8Q96RN1 970 aa18.54■□□□□ 0.56
CTSA-210ENST00000606000 PLEKHG1Q9ULL1 1385 aa18.51■□□□□ 0.55
CTSA-210ENST00000606000 NWD1Q149M9 1564 aa18.51■□□□□ 0.55
CTSA-210ENST00000606000 PPP1R15AO75807 674 aaPredicted RBP18.49■□□□□ 0.55
CTSA-210ENST00000606000 BCANQ96GW7 911 aa18.49■□□□□ 0.55
CTSA-210ENST00000606000 KIF1BO60333 1816 aa18.48■□□□□ 0.55
CTSA-210ENST00000606000 NRXN3Q9Y4C0 1643 aa18.47■□□□□ 0.55
CTSA-210ENST00000606000 ADAMTS13Q76LX8 1427 aa18.47■□□□□ 0.55
CTSA-210ENST00000606000 CHD2O14647 1828 aaKnown RBP18.46■□□□□ 0.55
CTSA-210ENST00000606000 PIP4K2BP78356 416 aa18.46■□□□□ 0.55
CTSA-210ENST00000606000 SLC4A1APQ9BWU0 796 aaKnown RBP18.46■□□□□ 0.55
CTSA-210ENST00000606000 SCAF1Q9H7N4 1312 aaKnown RBP18.46■□□□□ 0.55
CTSA-210ENST00000606000 NEXMIFQ5QGS0 1516 aa18.45■□□□□ 0.54
CTSA-210ENST00000606000 FOXD1Q16676 465 aa18.45■□□□□ 0.54
CTSA-210ENST00000606000 RBM33Q96EV2 1170 aaKnown RBP18.44■□□□□ 0.54
CTSA-210ENST00000606000 DIP2AQ14689 1571 aa18.43■□□□□ 0.54
CTSA-210ENST00000606000 KCNA6P17658 529 aa18.43■□□□□ 0.54
CTSA-210ENST00000606000 NKTRP30414 1462 aaKnown RBP18.43■□□□□ 0.54
CTSA-210ENST00000606000 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.42■□□□□ 0.54
CTSA-210ENST00000606000 TMEM94Q12767 1356 aa18.42■□□□□ 0.54
CTSA-210ENST00000606000 SETD5Q9C0A6 1442 aa18.41■□□□□ 0.54
CTSA-210ENST00000606000 TOM1O60784 492 aa18.41■□□□□ 0.54
CTSA-210ENST00000606000 HDGFP51858 240 aaKnown RBP18.41■□□□□ 0.54
CTSA-210ENST00000606000 ZNF326Q5BKZ1 582 aaKnown RBP18.41■□□□□ 0.54
CTSA-210ENST00000606000 SETBP1Q9Y6X0 1596 aa18.41■□□□□ 0.54
CTSA-210ENST00000606000 RAB3GAP2Q9H2M9 1393 aa18.38■□□□□ 0.53
CTSA-210ENST00000606000 PPLO60437 1756 aa18.37■□□□□ 0.53
CTSA-210ENST00000606000 HSPA1LP34931 641 aa18.37■□□□□ 0.53
CTSA-210ENST00000606000 PROSER2Q86WR7 435 aaPredicted RBP18.37■□□□□ 0.53
CTSA-210ENST00000606000 MPHOSPH9Q99550 1183 aa18.37■□□□□ 0.53
CTSA-210ENST00000606000 TBX22Q9Y458 520 aa18.37■□□□□ 0.53
CTSA-210ENST00000606000 PTPRUQ92729 1446 aa18.37■□□□□ 0.53
CTSA-210ENST00000606000 SETD1AO15047 1707 aaKnown RBP18.35■□□□□ 0.53
CTSA-210ENST00000606000 XRN1Q8IZH2 1706 aaKnown RBP18.35■□□□□ 0.53
CTSA-210ENST00000606000 IFT172Q9UG01 1749 aa18.33■□□□□ 0.52
CTSA-210ENST00000606000 CCDC144AA2RUR9 1427 aa18.32■□□□□ 0.52
CTSA-210ENST00000606000 METP08581 1390 aa18.32■□□□□ 0.52
CTSA-210ENST00000606000 ROBO1Q9Y6N7 1651 aa18.31■□□□□ 0.52
CTSA-210ENST00000606000 PIK3R4Q99570 1358 aa18.31■□□□□ 0.52
CTSA-210ENST00000606000 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.29■□□□□ 0.52
CTSA-210ENST00000606000 SPATA31E1Q6ZUB1 1445 aa18.29■□□□□ 0.52
CTSA-210ENST00000606000 MSH6P52701 1360 aa18.29■□□□□ 0.52
CTSA-210ENST00000606000 AMOTL2Q9Y2J4 779 aa18.28■□□□□ 0.52
CTSA-210ENST00000606000 DISP3Q9P2K9 1392 aa18.27■□□□□ 0.51
CTSA-210ENST00000606000 MED1Q15648 1581 aaPredicted RBP18.25■□□□□ 0.51
CTSA-210ENST00000606000 RGL3Q3MIN7 710 aa18.25■□□□□ 0.51
CTSA-210ENST00000606000 NALCNQ8IZF0 1738 aa18.24■□□□□ 0.51
CTSA-210ENST00000606000 RPGRIP1LQ68CZ1 1315 aa18.23■□□□□ 0.51
CTSA-210ENST00000606000 C14orf37Q86TY3 774 aa18.23■□□□□ 0.51
CTSA-210ENST00000606000 FAM135BQ49AJ0 1406 aa18.23■□□□□ 0.51
CTSA-210ENST00000606000 NCOA3Q9Y6Q9 1424 aa18.23■□□□□ 0.51
CTSA-210ENST00000606000 ADGRF5Q8IZF2 1346 aa18.23■□□□□ 0.51
CTSA-210ENST00000606000 VGFO15240 615 aaPredicted RBP18.22■□□□□ 0.51
CTSA-210ENST00000606000 ASXL1Q8IXJ9 1541 aa18.2■□□□□ 0.5
CTSA-210ENST00000606000 ACIN1Q9UKV3 1341 aaKnown RBP18.2■□□□□ 0.5
CTSA-210ENST00000606000 PHLPP1O60346 1717 aa18.19■□□□□ 0.5
CTSA-210ENST00000606000 SLAIN2Q9P270 581 aa18.18■□□□□ 0.5
CTSA-210ENST00000606000 ROBO2Q9HCK4 1378 aa18.17■□□□□ 0.5
CTSA-210ENST00000606000 ANKRD30BQ9BXX2 1392 aa18.17■□□□□ 0.5
CTSA-210ENST00000606000 PIK3C2GO75747 1445 aa18.16■□□□□ 0.5
CTSA-210ENST00000606000 PTCH1Q13635 1447 aa18.16■□□□□ 0.5
CTSA-210ENST00000606000 ILDR2Q71H61 639 aa18.16■□□□□ 0.5
CTSA-210ENST00000606000 C19orf44Q9H6X5 657 aa18.16■□□□□ 0.5
CTSA-210ENST00000606000 ADGRL3Q9HAR2 1447 aa18.15■□□□□ 0.5
CTSA-210ENST00000606000 COL16A1Q07092 1604 aaPredicted RBP18.15■□□□□ 0.5
CTSA-210ENST00000606000 PRAG1Q86YV5 1406 aa18.15■□□□□ 0.5
CTSA-210ENST00000606000 ATF3P18847 181 aa18.14■□□□□ 0.49
CTSA-210ENST00000606000 DCCP43146 1447 aa18.14■□□□□ 0.49
CTSA-210ENST00000606000 MST1RQ04912 1400 aa18.14■□□□□ 0.49
CTSA-210ENST00000606000 MYOM2P54296 1465 aa18.14■□□□□ 0.49
CTSA-210ENST00000606000 KNDC1Q76NI1 1749 aa18.13■□□□□ 0.49
CTSA-210ENST00000606000 CADPS2Q86UW7 1296 aa18.13■□□□□ 0.49
CTSA-210ENST00000606000 NRXN1Q9ULB1 1477 aa18.13■□□□□ 0.49
CTSA-210ENST00000606000 HRCP23327 699 aa18.12■□□□□ 0.49
CTSA-210ENST00000606000 AHDC1Q5TGY3 1603 aaPredicted RBP18.11■□□□□ 0.49
CTSA-210ENST00000606000 LAMC1P11047 1609 aa18.1■□□□□ 0.49
CTSA-210ENST00000606000 TMEM132EQ6IEE7 984 aa18.1■□□□□ 0.49
CTSA-210ENST00000606000 NHSL1Q5SYE7 1610 aa18.09■□□□□ 0.49
CTSA-210ENST00000606000 BRINP3Q76B58 766 aa18.08■□□□□ 0.48
CTSA-210ENST00000606000 STK26Q9P289 416 aa18.08■□□□□ 0.48
CTSA-210ENST00000606000 TECPR2O15040 1411 aa18.06■□□□□ 0.48
CTSA-210ENST00000606000 LRPPRCP42704 1394 aaKnown RBP18.06■□□□□ 0.48
CTSA-210ENST00000606000 PLEKHH1Q9ULM0 1364 aa18.06■□□□□ 0.48
CTSA-210ENST00000606000 CFAP70Q5T0N1 1121 aa18.06■□□□□ 0.48
CTSA-210ENST00000606000 YTHDC2Q9H6S0 1430 aaKnown RBP18.06■□□□□ 0.48
CTSA-210ENST00000606000 CDC42BPGQ6DT37 1551 aa18.05■□□□□ 0.48
CTSA-210ENST00000606000 C1orf167Q5SNV9 1468 aa18.04■□□□□ 0.48
CTSA-210ENST00000606000 WAPLQ7Z5K2 1190 aa18.04■□□□□ 0.48
CTSA-210ENST00000606000 C14orf93Q9H972 538 aaKnown RBP18.04■□□□□ 0.48
CTSA-210ENST00000606000 DHX57Q6P158 1386 aaKnown RBP18.04■□□□□ 0.48
CTSA-210ENST00000606000 SHPRHQ149N8 1683 aa18.03■□□□□ 0.48
CTSA-210ENST00000606000 DDX17Q92841 729 aaKnown RBP18.03■□□□□ 0.48
CTSA-210ENST00000606000 ADGRB1O14514 1584 aa18.02■□□□□ 0.48
CTSA-210ENST00000606000 KDM2AQ9Y2K7 1162 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms